Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,063,944 – 1,064,064 |
Length | 120 |
Max. P | 0.622817 |
Location | 1,063,944 – 1,064,064 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -33.77 |
Consensus MFE | -17.46 |
Energy contribution | -18.82 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.16 |
Mean z-score | -1.81 |
Structure conservation index | 0.52 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1063944 120 + 22224390 AGGAAUAUCCGCAGCAAUACCAGCAACCCUCCGUCCUGGUGGGCUUAUUUACUCCUCAACUGCAGGCCCAGCCACUGUCAGCUCCUCCUCCGCAGGCUGGACAUUUUAGCCUGCCCUUCA ((((......((((....(((((..((.....)).)))))((((((.................)))))).....)))).......))))..((((((((((...))))))))))...... ( -32.05) >DroSec_CAF1 12911 120 + 1 AGGCAUAUCUGCAGCAAUACCAGCAACCCCCCGUCCUGGUGGGCUUAUUCACUCCUCAACUGCAGGCCCAGCCACUGGCAGCUCCUCCUCCGCAGGCUGGGCAUUUUAGCCUGCCCUUCA ((((....((((((....(((((..((.....)).)))))(((........))).....))))))((((((((..(((.((......)))))..))))))))......))))........ ( -41.30) >DroSim_CAF1 13872 105 + 1 ---------------AAUACCAGCAACCCUCCGUCCUGGUGGGAUUAUUCACUCCUCAACUGCAGGCCCAGCCACUGGCAGCACCUCCGCCGCAGGCUGGGCAUUUUAGCCUGCCCUUCA ---------------.......(((.(((.((.....)).)))......................((((((((..((((.........))))..)))))))).........)))...... ( -33.10) >DroYak_CAF1 15424 120 + 1 AGGCAAAUCCGGUGCAGUUCCAGCAUCCGUCCGUCCUGGUGGGCUUAUUCACUGCCCAACUGCAGGCCCCGCCGUUGGCAGCUCCUCCUCCACAGGCAGGUCACUUCAGCCUGCCCUUCA ((((........(((((((((((.((......)).)))).((((.........)))))))))))((((..(((..(((.((......)))))..))).))))......))))........ ( -39.30) >DroAna_CAF1 16871 117 + 1 AGCAAUAUCCUCCACAGUAUCCUCAGCAACCUGUCCUCUUUGGCUUAUUUGCUCCUCAGUUGCAAGUUCAUCCUCUGGCCGCUCCU---CCCCAGGCCGGACACUUCACUCUGCCCUUCA (((((......(((.((......(((....)))....)).))).....)))))........((((((......(((((((......---.....)))))))......))).)))...... ( -23.10) >consensus AGGAAUAUCCGCAGCAAUACCAGCAACCCUCCGUCCUGGUGGGCUUAUUCACUCCUCAACUGCAGGCCCAGCCACUGGCAGCUCCUCCUCCGCAGGCUGGACAUUUUAGCCUGCCCUUCA ................................((((....)))).................((((((((((((..(((...........)))..))))))........))))))...... (-17.46 = -18.82 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:15 2006