Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,204,506 – 9,204,614 |
Length | 108 |
Max. P | 0.706462 |
Location | 9,204,506 – 9,204,614 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -30.08 |
Consensus MFE | -21.45 |
Energy contribution | -21.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.65 |
Structure conservation index | 0.71 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9204506 108 + 22224390 UAUGUGUGUGUGUGUGGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUUUUUGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUAUAUAUAUA ((((((((((((((((((((.(((..(((....)))..)))))))..(((.(((..((.(((....))).))..))).)))...........)))))))))))))))) ( -32.10) >DroSec_CAF1 34027 99 + 1 UAUGUGU----GUGUGGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUUGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUAUAU----- (((((((----((((((..((..((.....))..))..))).(((((((..(((((....))))).((......)).......)))))))..)))))))))).----- ( -28.90) >DroEre_CAF1 16046 102 + 1 UAUGUGU----GU--GGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUGGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUACAUACAUA (((((((----((--(((((.(((..(((....)))..)))))))((((((((.......((((((((......)).))))))..)))))))).)))))))))).... ( -31.90) >DroYak_CAF1 3323 103 + 1 UAUGUGU----GU-UGGGGAAUGGGGAAUGCAUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUAGCUCUUUCGCUCGAUACAUUUAGUUUCACACAUACAUACAUA (((((((----((-((((((.(((..(((....)))..)))))))(((.(((((((....))))))).))).......((.((.....)).))...)).))))))))) ( -27.40) >consensus UAUGUGU____GU_UGGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUUGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUACAUACAUA (((((((.........((((.(((..(((....)))..)))))))(((((((((((....))))..((......))..........))))))))))))))........ (-21.45 = -21.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:33 2006