Locus 3434

Sequence ID X_DroMel_CAF1
Location 9,173,879 – 9,173,973
Length 94
Max. P 0.725043
window5623

overview

Window 3

Location 9,173,879 – 9,173,973
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -25.40
Consensus MFE -25.40
Energy contribution -25.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 1.00
SVM decision value 0.41
SVM RNA-class probability 0.725043
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9173879 94 + 22224390
AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU
.((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... ( -25.40)
>DroSec_CAF1 1743 94 + 1
AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU
.((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... ( -25.40)
>DroSim_CAF1 1743 94 + 1
AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU
.((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... ( -25.40)
>consensus
AGUAGUAGUAAAGCAUGCUGAGAGCGCGAGCACAAAAGCUGCUGCAGAGUUAACAUCUGGAUGUUAAAACUUAACUUCUCGGUUAACUGACGGU
.((((((((..((....))....((....))......))))))))..(((((((....(((.((((.....)))).)))..)))))))...... (-25.40 = -25.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:21 2006