Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,173,342 – 9,173,462 |
Length | 120 |
Max. P | 0.874466 |
Location | 9,173,342 – 9,173,462 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.15 |
Mean single sequence MFE | -56.38 |
Consensus MFE | -33.68 |
Energy contribution | -34.08 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.14 |
Mean z-score | -1.77 |
Structure conservation index | 0.60 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9173342 120 - 22224390 CGGCACAUCCGCAACAUGCCGCUUUAGCGCAGGCGGCGUACGGUGGCAGCCCACAGAGACGCUUCCUCUCCGAGGGCGAACUGGUGCGCCAGGGUGCUGGAGGAGGCGUUGCCGGCGGAG .......(((((...(((((((((......))))))))).((((((....)).....((((((((((((.....((((..((((....))))..))))))))))))))))))))))))). ( -60.20) >DroVir_CAF1 1257 93 - 1 ------AGCA---GCA-AU--CGCUAGCGCAGGCUGCCUAUGGCGGCAGCCCACAGCGUCGCUUUCUGUCUGAGGGCGAGCUGGUGCGACAGGGCGCU---------------GGCGGGG ------....---...-.(--(((((((((.(((((((......)))))))..((((.((((((((.....))))))))))))..........)))))---------------))))).. ( -51.90) >DroSec_CAF1 1218 120 - 1 CGGCACAUCCGCAACACGCCGCUCUGUCGCAGGCUGCAUACGGUGGCAGCCCACAGAGGCGCUUCCUCUCCGAGGGCGAACUGGUGCGCCAGGGUGCCGGAGGAGGCGUUUCCGGCGGAG ((((.............))))((((((((..((((((........))))))....((((((((((((((.....((((..((((....))))..)))))))))))))))))))))))))) ( -62.62) >DroSim_CAF1 1218 120 - 1 CGGCACAUCCGCAACACGCCGCUCUGGCGCAGGCUGCAUACGGCGGCAGCCCACAGAGGCGCUUCCUCUCCGAGGGCGAACUGGUGCGCCAGGGUGCCGGAGGAGGCGUUGCCGGCGGAG .......(((((..((((((.(((((((((..(((((.....))))).((((.((((((.....)))))..).))))...((((....)))).)))))))))..)))).))...))))). ( -61.70) >DroMoj_CAF1 1283 90 - 1 ------A------GCA-GU--CGCUGGCGCAGGCUGCUUAUGGCGGCAGUCCGCAGCGUCGCUUCCUGUCUGAGGGCGAGCUGGUGCGGCAGGGCGCU---------------GGCGGUG ------.------...-.(--(((..((((..(((((.....((((....))))(((.(((((..(.....)..))))))))...)))))...)))).---------------.)))).. ( -45.50) >consensus CGGCACAUCCGCAACA_GCCGCUCUGGCGCAGGCUGCAUACGGCGGCAGCCCACAGAGGCGCUUCCUCUCCGAGGGCGAACUGGUGCGCCAGGGUGCUGGAGGAGGCGUU_CCGGCGGAG .....................(((((.((((((((((........))))))..(((...((((..(.....)..))))..))).)))).)))))((((((...........))))))... (-33.68 = -34.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:20 2006