Locus 3430

Sequence ID X_DroMel_CAF1
Location 9,160,889 – 9,160,982
Length 93
Max. P 0.996523
window5617

overview

Window 7

Location 9,160,889 – 9,160,982
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 88.16
Mean single sequence MFE -30.66
Consensus MFE -24.60
Energy contribution -25.48
Covariance contribution 0.88
Combinations/Pair 1.05
Mean z-score -2.96
Structure conservation index 0.80
SVM decision value 2.71
SVM RNA-class probability 0.996523
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9160889 93 - 22224390
AUGGUAUAAAACGCGAGUAACUGCAUACAAGCCAGCGACCAACUGCAUAAAUAUGGCGACUGGCGGCCGACGGAAAUGGCCGUCGCGGUUGCA
................((((((((......(((((((.(((............))))).)))))....(((((......))))))))))))). ( -34.40)
>DroSec_CAF1 2033 90 - 1
AUGGCAUAAAACGCGAGUAACUGCAUACAAGCUAGCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA
...((.......))..((((((((......(((((((.(((............))))).))))---).(((((......))))))))))))). ( -31.90)
>DroSim_CAF1 3982 85 - 1
AUGGCAUAAAACGCGAGUAACUGCAUACA-----GCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA
...(((....((....))...))).....-----((((((.....(((....)))(((((.((---(((.......)))))))))))))))). ( -30.90)
>DroEre_CAF1 2843 80 - 1
--------AA--GCGAGUAACUACAUACAAACCAGCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA
--------..--....(((......)))......((((((.....(((....)))(((((.((---(((.......)))))))))))))))). ( -26.80)
>DroYak_CAF1 2154 82 - 1
--------AAACGCGAGUAACUACAUGCAAACCAGCGACCAACUGCAUAAAUAUGGCGACUGG---CCGACGGAAAUGGCCGUCGCGGUUGCA
--------....(((.((....)).)))......((((((.....(((....)))(((((.((---(((.......)))))))))))))))). ( -29.30)
>consensus
AUGG_AUAAAACGCGAGUAACUGCAUACAAACCAGCGACCAACUGCAUAAAUAUGGCGACUGG___CCGACGGAAAUGGCCGUCGCGGUUGCA
................((((((((.......((((((.(((............))))).)))).....(((((......))))))))))))). (-24.60 = -25.48 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006