Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,063,740 – 1,063,856 |
Length | 116 |
Max. P | 0.512837 |
Location | 1,063,740 – 1,063,856 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.67 |
Mean single sequence MFE | -38.02 |
Consensus MFE | -28.08 |
Energy contribution | -28.20 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.26 |
Mean z-score | -1.52 |
Structure conservation index | 0.74 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1063740 116 + 22224390 GGCGUCCUUUGAUCCUGCCAACAGCCAGUCCUUCACUACCUUCUCUGACGGCGCUGGCUCAACUGAGUCCUGGCUACACGGGCCCGCAGACCUUUCCUCCAGUUC-CA---CAGGAUCAA ........(((((((((..((((((((((((.(((..........))).)).)))))))...(((.((((((....)).))))...)))............))).-..---))))))))) ( -35.70) >DroSec_CAF1 12746 116 + 1 GGCGUCCUUUGAUCCUGCCCACAGCCAGUCCUUCACUGCCUUCUCUGACGGCGCUGGCUCAACUGAGUCCUGGCUACACGGGUCCGCAGACCUUUCCGCCAGUUC-CA---CAGGAUCAA ........(((((((((.....(((((((((.(((..(....)..))).)).)))))))....((.(..(((((.....(((((....)))))....)))))..)-))---))))))))) ( -41.30) >DroSim_CAF1 13692 116 + 1 GGCGUCCUUUGAUCCUGCCCACAGCCAGUCCUUCACUGCCUUCUCUGACGGCGCUGGCUCAACUGAGUCCUGGCUACACGGGCCCGCAGACCUUUCCGCCAGUUC-CA---CAGGAUCAA ........((((((((((((..((((((.........(((.((...)).)))...(((((....)))))))))))....))))..((.((....)).))......-..---.)))))))) ( -36.90) >DroYak_CAF1 15148 116 + 1 GGCGACCUUUGAUCCUGCCCACAGCUAGCCCUU---UGCCUUCCUUGGCGGCGCUGGCUCAACUGAGUCCUGGCUACACGGGUCCGCAGACCUUUCCUCCAGAUG-CACAACAGGACCAA ........(((.(((((.....(((((((((..---.(((......))))).)))))))....((.((.((((......(((((....))))).....))))..)-).)).))))).))) ( -35.40) >DroAna_CAF1 16699 110 + 1 GGCGUCCUCUGAUCCUGCCCAGAGUAGCUCCCACGC------CAUUGGCGGGCGUUUCUCAACUGAGUCCGGGCUAUACGGGUCCUCAGACCUUUCCUCCAGUGCUCG---CAGGAUCA- ..........((((((((...(((.(((.(((..((------(...)))))).))).)))....(((..(.((......(((((....))))).....)).)..))))---))))))).- ( -40.80) >consensus GGCGUCCUUUGAUCCUGCCCACAGCCAGUCCUUCACUGCCUUCUCUGACGGCGCUGGCUCAACUGAGUCCUGGCUACACGGGUCCGCAGACCUUUCCUCCAGUUC_CA___CAGGAUCAA .........((((((((.....(((((((((.(((..........))).)).)))))))...(((...((((......))))....)))......................)))))))). (-28.08 = -28.20 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006