Locus 3427

Sequence ID X_DroMel_CAF1
Location 9,156,123 – 9,156,241
Length 118
Max. P 0.898701
window5608

overview

Window 8

Location 9,156,123 – 9,156,241
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.66
Mean single sequence MFE -36.86
Consensus MFE -29.72
Energy contribution -30.56
Covariance contribution 0.84
Combinations/Pair 1.03
Mean z-score -1.83
Structure conservation index 0.81
SVM decision value 1.00
SVM RNA-class probability 0.898701
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9156123 118 - 22224390
GCCUGAAUUCAAGGAAUUCACACGCUUCCACGAAUGUGCGAAC--GUAAAAACCGGGCUAACAGUGGGAAUUCUAGCGCAUCGCAAAUAGGCGGAGUCGGGUCAAAAGUUGUGAAAACAC
((((((.(((..(((((((.(((....((.((....(((....--))).....))))......))).))))))).......(((......)))))))))))).......(((....))). ( -28.40)
>DroSec_CAF1 8793 118 - 1
GCCUGAAUUCAAGGAAUUCGCACGCUUCCACGAAUGUGCGAGC--GUAAAAACCUGGCUAACAGUGGGAAUUCUGGCCCAUUGCAAAUAGGCGGACUCGGGUCAAAAGUUGUGAAAACAC
((((((.(((..(((((((.(((((((.(((....))).))))--))......(((.....))).).))))))).(((.((.....)).)))))).)))))).......(((....))). ( -36.30)
>DroSim_CAF1 9821 118 - 1
GCCUGAAUUCAAGGAAUUCGCACGCUUCCACGAAUGUGCGAGC--GUAAAAACCUGGCUAACAGUGGGAAUUCUGGCCCAUCGCAAAUAGGCGGAGUCGGGUCAAAAGUUGUGAAAACAC
.(((.......)))..(((((((((((.(((....))).))))--))....((((((((....(((((........)))))(((......))).))))))))........)))))..... ( -37.60)
>DroEre_CAF1 9133 117 - 1
GCCUGAAUUCAAGGAAUUCGCACGCUUCCACGAAAGUGCGAGC--GUAAAAACCGGGCUAACAGUGGGAAUUCUGGCCCAUAGCAGAAGGGCGGAGCCGGGUCAA-AGUUGUGAAAACAC
.(((.......)))..(((((((((((.(((....))).))))--))....(((.((((..(((........)))((((.........))))..)))).)))...-....)))))..... ( -42.10)
>DroYak_CAF1 9315 114 - 1
GCCUAAAUUCAAGGAAUUCGCACGCUUCCACGAAUGUGCGAGCCGGUAAAAACCGGGCUAACAGUGGGAAUUCUGGCCCA-----AAAGGGCGAAGCCGGGUCAA-AGUUGUGAAAACAC
((((...(((..(((((((.(((((((.(((....))).))))((((....))))........))).))))))).((((.-----...)))))))...))))...-...(((....))). ( -39.90)
>consensus
GCCUGAAUUCAAGGAAUUCGCACGCUUCCACGAAUGUGCGAGC__GUAAAAACCGGGCUAACAGUGGGAAUUCUGGCCCAUCGCAAAUAGGCGGAGUCGGGUCAAAAGUUGUGAAAACAC
((((((.(((..(((((((.(((((((.(((....))).))))............(.....).))).))))))).(((...........)))))).)))))).......(((....))). (-29.72 = -30.56 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:08 2006