Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,153,505 – 9,153,623 |
Length | 118 |
Max. P | 0.925855 |
Location | 9,153,505 – 9,153,623 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 86.02 |
Mean single sequence MFE | -32.38 |
Consensus MFE | -22.83 |
Energy contribution | -24.08 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.11 |
Mean z-score | -2.48 |
Structure conservation index | 0.70 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9153505 118 - 22224390 ACGUUUCCCGCUCGGCAUAUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGGCGGCGAAAGCAACGGGCACAACAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA .((((((......(((...(((((((((...))))))))).)))....))))))(..((....))..).(((((.........))))).............(((((......))))). ( -36.00) >DroSec_CAF1 6241 118 - 1 ACGUUUCCCGCUCGGCAUAUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGUCGGCGAAUGCAACGGGCACAACAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA ..(((.((((....((((.(((((((((...))))))))).(((.((......)).)))..))))..))))...)))...(((((.........)))))..(((((......))))). ( -31.50) >DroEre_CAF1 6406 100 - 1 AAGUUUCCCGCUCGGCAUUUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGCUGC------------------CAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA ..(((((......(((...(((((((((...))))))))).)))....)))))(((((------------------...((((((.((............))))))))...))))).. ( -26.50) >DroYak_CAF1 6479 118 - 1 AAGUUAGCCGCUCGGCAUACGAAUACCUCCUGGGCAUUUGGGCCAAUUGAAACGGUGGCGAAAGCAACGGGCACAACAAAUUGGCGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA ..(((((((((((((..............)))))).((((((((((((....(.((.((....)).)).)........))))))).)))))..........))))))).......... ( -35.54) >consensus AAGUUUCCCGCUCGGCAUAUAAAUACCCCCUGGGUAUUUGGGCCAACUGAAACGGCGGCGAAAGCAACGGGCACAACAAAUUGGUGCUAAAAUAAUCAAAAGGCUAAUAAAGUAGCUA .........(((((((...(((((((((...))))))))).))).............((....))...))))........(((((.........)))))..(((((......))))). (-22.83 = -24.08 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:01 2006