Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,147,297 – 9,147,404 |
Length | 107 |
Max. P | 0.951883 |
Location | 9,147,297 – 9,147,404 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 95.26 |
Mean single sequence MFE | -60.50 |
Consensus MFE | -59.06 |
Energy contribution | -59.12 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.99 |
Structure conservation index | 0.98 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.951883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9147297 107 - 22224390 ----CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCAGCGGGUGGCGGCGGCGGCGGUGGCAAGGCCAUCUGGUGUUGCAGGUG ----.((.(((....(((((.((((((((((((((((((..((((..(((...(((...)))...)))..))))..)))))))))))...)))))))))).)).))))).. ( -57.80) >DroSec_CAF1 106 107 - 1 ----CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGCGGUGGCAAGGCCAUCUGGUGCUGCAGGUG ----.((.(((....(((((.((((((((((((((((((..(((((.(((...(((...)))...))).)))))..)))))))))))...)))))))))).)).))))).. ( -62.70) >DroEre_CAF1 88 111 - 1 CAUGCCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGUGGUGGCAAGGCCAUCUGGUGCUGCAGGUG ...(((..(((....(((((.(((((((((((..(((((..(((((.(((...(((...)))...))).)))))..)))))..))))...)))))))))).)).)))))). ( -61.70) >DroYak_CAF1 105 107 - 1 ----CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGUGGCGGUAAGGCCAUCUGGUGCUGCAGGUG ----.((.(((....(((((.(((((((..(((((((((...((((........))))((((((((.....)))))))))))))))))..)))))))))).)).))))).. ( -59.80) >consensus ____CCCAUGCCCAUGCCCAUGGUGGCUCCAUUGCCGCCCACGCCCACCGAAACGGGUGCCGCUGCGGGGGGCGGCGGCGGCGGUGGCAAGGCCAUCUGGUGCUGCAGGUG .....((.(((....(((((.((((((((((((((((((..(((((.(((...(((...)))...))).)))))..)))))))))))...)))))))))).)).))))).. (-59.06 = -59.12 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:57 2006