Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,134,017 – 9,134,114 |
Length | 97 |
Max. P | 0.721958 |
Location | 9,134,017 – 9,134,114 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -23.30 |
Energy contribution | -24.14 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.21 |
Mean z-score | -1.57 |
Structure conservation index | 0.88 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9134017 97 - 22224390 AUUCUUUGGGCUCGCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUUAAUUUUCAGAAAUGUUAUAUAGUCAACC .((((((((((.((((...((((((((((........))))))))))))).).))))))))))(.((........((....))......)).).... ( -28.14) >DroSec_CAF1 2717 96 - 1 CCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUCAAUUUCCAC-AAUGUUAUAUGGUAAACU ((...((((((.(....((((((((((((........))))))))))))..).))))))((((((.....))))))..-..........))...... ( -24.80) >DroSim_CAF1 3233 96 - 1 CCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGAGCUCGAGGAAGUCUUCAAUUUCCAC-AAUGUUAUAUGGUAAACU ((...((((((((....((((((((((((........))))))))))))..))))))))((((((.....))))))..-..........))...... ( -29.00) >DroEre_CAF1 5860 80 - 1 CUUCCUGGGGCUCUUAAUAAUCGGCAGUUGGCAAAGGAAGUGCUGUUUGCAGUGCCCGAGGAAGUCCUCAAUUUCCAC-AA---------------- ((((((.((((.(((((....(((((.((........)).))))).))).)).)))).))))))..............-..---------------- ( -27.00) >DroYak_CAF1 4065 94 - 1 CCUCUUUGGGCUCCUAAUAAUCGGCCCUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGGGAAGGUCAACAAUUUCCAC-AAUGUUGU--AGUAAACU (((..((((((.(....((((((((((((....))))....))))))))..).))))))..))).(((((........-..))))).--........ ( -23.20) >consensus CCUCUUUGGGCUCCCAAUAAUCGGCAUUUGGCAAAGGAAGUGCUGAUUGCAGUGCUCGAGGAAGUCUUCAAUUUCCAC_AAUGUUAUAUAGUAAACU (((((((((((.(....((((((((((((........))))))))))))..).)))))))))))................................. (-23.30 = -24.14 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:55 2006