Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,063,543 – 1,063,703 |
Length | 160 |
Max. P | 0.556370 |
Location | 1,063,543 – 1,063,663 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -38.06 |
Consensus MFE | -21.10 |
Energy contribution | -23.08 |
Covariance contribution | 1.98 |
Combinations/Pair | 1.29 |
Mean z-score | -1.75 |
Structure conservation index | 0.55 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1063543 120 - 22224390 GCGUUCAUCAAUGCAAAACAGCUGAUUAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCUCAAUAUGGUUGUCUGUUGCAAAUGCUUGCAGUGGCCCUGA (((((....)))))....(((((.....))))).(((((.(((.(((.((((..((((......))))..)))).))).)))..........(..((((((....))))))..).))))) ( -39.50) >DroSec_CAF1 12549 120 - 1 GCGUUUAUCAAUGCAAAACAGCCGAUCAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCUCAAUAUGGUUGUCGGUUGCAAAUGCUUGCAGUGGCCCUGA (((((....)))))....(((((.....))))).(((((.(((.(((.((((..((((......))))..)))).))).)))........((((.(.((((....))))).))))))))) ( -40.70) >DroSim_CAF1 13501 120 - 1 GCGUUUAUCAAUGCAAAAUAGCCGAUCAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCUCAAUAUGGUUGUCGGUUGCAAAUGCUUGCAGUGGCCCUGA (((((....)))))....(((((.....))))).(((((.(((.(((.((((..((((......))))..)))).))).)))........((((.(.((((....))))).))))))))) ( -38.60) >DroYak_CAF1 14957 111 - 1 GCCCGCAUCAAUGCAAAACAGCCAAA---------CAGGCUGACCAGGAUGUCGAGGUGAAUAAACCUGAACAUGCUGCUCAAUAUGGUUGUCUGUUGCAAAUGCUUGCAGUGGCCCUGA (((((((.((.(((((.(((((((..---------.....(((.(((.((((..((((......))))..)))).))).)))...)))))))...)))))..))..))).).)))..... ( -35.50) >DroAna_CAF1 16559 108 - 1 GCCUCCGGGCAACAGAAACAGCUGGCCAGG------------AUCAGGGCCUUGAGGUGGACAACCUUGAACAUGUUGCCCAAGAUUGUUGGCUUUUGCAAAUGUUGCCACCGACACUGC ......((((((((.........((((...------------.....))))(..((((.....))))..)...)))))))).....((((((.....(((.....)))..)))))).... ( -36.00) >consensus GCGUUCAUCAAUGCAAAACAGCCGAUCAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCUCAAUAUGGUUGUCUGUUGCAAAUGCUUGCAGUGGCCCUGA (((..(((...(((((.(((((((.....(((.....)))(((.(((.((((..((((......))))..)))).))).)))...)))))))...))))).)))..)))........... (-21.10 = -23.08 + 1.98)
Location | 1,063,583 – 1,063,703 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -40.35 |
Consensus MFE | -29.51 |
Energy contribution | -29.95 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.46 |
Structure conservation index | 0.73 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1063583 120 - 22224390 CCCCGAUACCUCCUGCUGGUGGAAUUGCUGCUGCUGCUGGGCGUUCAUCAAUGCAAAACAGCUGAUUAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCU ...((((.((.((....)).)).))))..((.((..(((((((((....)))))....(((((((((.....))))).)))).)))).((((..((((......))))..)))))).)). ( -37.60) >DroSec_CAF1 12589 120 - 1 CCCCGUAAUCUCCUGCUGGUGGGAUUGCUGCUGCUGCUGGGCGUUUAUCAAUGCAAAACAGCCGAUCAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCU ....(((((((((.....).)))))))).((.((..(((((((((....)))))....(((((((((.....)))).))))).)))).((((..((((......))))..)))))).)). ( -43.50) >DroSim_CAF1 13541 114 - 1 CCGCGAAAUCUCCUGCUGGUGGGAUUGCU------GCUGGGCGUUUAUCAAUGCAAAAUAGCCGAUCAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCU (((((.(((((((.....).))))))..)------)).))(((((....)))))....(((((((((.....)))).)))))..(((.((((..((((......))))..)))).))).. ( -37.20) >DroYak_CAF1 14997 111 - 1 CCCCGAAAGCUCCUGCUGGUGGGAUUGCUGCUGGUGCUGUGCCCGCAUCAAUGCAAAACAGCCAAA---------CAGGCUGACCAGGAUGUCGAGGUGAAUAAACCUGAACAUGCUGCU .((((..(((....)))..)))).((((...((((((.......))))))..))))..(((((...---------..)))))..(((.((((..((((......))))..)))).))).. ( -43.10) >consensus CCCCGAAAUCUCCUGCUGGUGGGAUUGCUGCUGCUGCUGGGCGUUCAUCAAUGCAAAACAGCCGAUCAGGCUGAUCAGGCUGACCAGGAUGUCGAGGUGAAAAAACCUGAACAUGCUGCU .............((((((((((...((.((....))...)).)))))))..)))...(((((((((.....)))).)))))..(((.((((..((((......))))..)))).))).. (-29.51 = -29.95 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:12 2006