Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,129,650 – 9,129,742 |
Length | 92 |
Max. P | 0.698449 |
Location | 9,129,650 – 9,129,742 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 77.54 |
Mean single sequence MFE | -29.29 |
Consensus MFE | -19.42 |
Energy contribution | -23.04 |
Covariance contribution | 3.62 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.66 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9129650 92 + 22224390 GGCCAAAGAGAGUCGUUCUCGUUCCAAUUGGCUCGCGAGGCAAGUGGAAAAACGAUUGGAUUCGACUCAGAGCCGAGCUCAAUCGUCUCGCG ((((((...(((.((....)))))...))))))((((((((..((......))(((((..((((.(.....).))))..))))))))))))) ( -33.50) >DroSec_CAF1 5652 92 + 1 GGCCAAAGAGAGCCGUUCUCGUUCCAAUUGGCUCGCGAGGCAAGUGGAAAAACGAUUGGAUUCGACUCAGAGCCGAGCUCAAUCGCCUCGCG ((((((...((((.......))))...))))))((((((((..((......))(((((..((((.(.....).))))..))))))))))))) ( -36.70) >DroSim_CAF1 4316 92 + 1 GGCCAAAGAGAGCCGUUCUCGUUUCAAUUGGCUCGCGAGGCAAGUGGAAAAACGAUUGGAUUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .(((...(.((((((.............)))))).)..)))..((......))....................................... ( -14.32) >DroYak_CAF1 5612 84 + 1 --------AGAGCCGUUCUCGUUCCAAUUGGCUCGCGAGGCAAGUGGAAAAACGAUUGGAUUCGACUCAGAGCCGAGCUCAUUCGCCUCGCG --------.((((((.............))))))(((((((..((......))((.((..((((.(.....).))))..)).))))))))). ( -32.62) >consensus GGCCAAAGAGAGCCGUUCUCGUUCCAAUUGGCUCGCGAGGCAAGUGGAAAAACGAUUGGAUUCGACUCAGAGCCGAGCUCAAUCGCCUCGCG .........((((((.............))))))(((((((..((......))(((((..((((.(.....).))))..)))))))))))). (-19.42 = -23.04 + 3.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:50 2006