Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,127,047 – 9,127,147 |
Length | 100 |
Max. P | 0.585777 |
Location | 9,127,047 – 9,127,147 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -18.30 |
Consensus MFE | -14.02 |
Energy contribution | -13.66 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.29 |
Mean z-score | -0.97 |
Structure conservation index | 0.77 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9127047 100 - 22224390 ACCUAUC---AUCCAUUUAAAUCCGUGAAUCAAUGUGGUUUUUGCCACUUCUGCUAUCUUUGCAGUUUGUGCACCUUAUGUAAAUACGGCUCUAUGUAGUG----UU .......---..............(((...(((.(((((....)))))..((((.......)))).)))..)))........(((((.((.....)).)))----)) ( -17.60) >DroSec_CAF1 2859 98 - 1 ACAUAUCAUCAUCCAUGUAAAUCCAUGAAUCAAUGUGGUUUGUGCCACUUCUGCUACCCUUGCAGUUUGUUCAC-UUAUGUAAAUACGGCUCU----AGUG----UU (((((........((((......)))).......(((((....)))))..((((.......)))).........-.))))).(((((......----.)))----)) ( -17.00) >DroSim_CAF1 944 98 - 1 ACAUAUCAUCAUCCAUGUAAAUCCGUGAAUCAAUGUGGUUUGUGCCACUUCUGCUACCCUUGCAGUUUGUUCAC-UUAUGUAAAUACGGCUCU----AGUG----UU (((((.(((.....))).......(((((.(((.(((((....)))))..((((.......)))).))))))))-.))))).(((((......----.)))----)) ( -19.70) >DroEre_CAF1 2891 92 - 1 --AAAUAAUACUAUAUGUAAAUCUGUGAAUCAAUGUGGCUUGUGCCACUUCUGCUACCCUUGCAGUU----AA-----UUUAAAUACGGUUCU----AGAACACUAG --......(((.....)))..((((.(((((...(((((....)))))..((((.......))))..----..-----.........))))))----)))....... ( -21.50) >DroYak_CAF1 2927 84 - 1 --AUCUCAUCAUCUCUGUAAAUCAGUGAAUCAAUGUGGUUUGUGCUACUUCUGCUACCCUUGCAGCUUGUGCA-----UUUAAAUAGUG--CU-------------- --.........((.(((.....))).))......(((((....)))))..((((.......)))).....(((-----((.....))))--).-------------- ( -15.70) >consensus ACAUAUCAUCAUCCAUGUAAAUCCGUGAAUCAAUGUGGUUUGUGCCACUUCUGCUACCCUUGCAGUUUGUGCAC_UUAUGUAAAUACGGCUCU____AGUG____UU ......................(((((.......(((((....)))))..((((.......))))...................))))).................. (-14.02 = -13.66 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:40 2006