Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,063,059 – 1,063,178 |
Length | 119 |
Max. P | 0.974163 |
Location | 1,063,059 – 1,063,178 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.42 |
Mean single sequence MFE | -29.95 |
Consensus MFE | -19.20 |
Energy contribution | -20.20 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.10 |
Mean z-score | -2.38 |
Structure conservation index | 0.64 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1063059 119 + 22224390 GGGGAAAACGUCUACACAGAAAAAAACAUUACGAUCUCUUGUGGCUACUGAACGCAAGAAAUUCAUGUUGAUUAUGACCAUGUUAUAGCAAUU-UUUUCUGUGCAGCACGGCAGCUAAUC ..((....(((((.(((((((((((.......((..(((((((.........)))))))...))...(((.(((((((...))))))))))))-))))))))).)).)))....)).... ( -30.80) >DroSec_CAF1 12069 119 + 1 GGGAAAACCGUCUACACAGAAAAAAACUUUACGAUCUCUUGUGGCUAUUUAAUGCAAGAAAUUCAUGUUGAUUAUCACCAUGUUAUGUCAAUU-UUUUCUGUGCAGCACGGCAGCUAAUC .((....((((((.(((((((((((.......(((.(((((((.........))))))).)))((((.((.....)).)))).........))-))))))))).)).))))...)).... ( -28.30) >DroSim_CAF1 13017 119 + 1 GGGAAAACCGUCUACACAGAAAAAAACUUUACGAUCUCUUGCGGCUACUUUAUGCAAGAAAUUCAUGUUGAUUAUCACCAUGUUAUGUCAAUU-UUUUCUGUGCAGCACGGCAGCUAAUC .((....((((((.(((((((((((.......(((.(((((((.........))))))).)))((((.((.....)).)))).........))-))))))))).)).))))...)).... ( -30.90) >DroYak_CAF1 14438 119 + 1 GGGAAAACCGCCUACACAGAAAAAAACAUAACCAUCUCUUUUGGUUACUAAAUGGUAGAGAUUCAUGUUGAUUAUCACCACAUUAGAGCAUUUUUUUUCUGUGCAGC-CAGCAGCUAAUC ((.....))((((.((((((((((((..((((((.......))))))((((.((((.((...((.....))...))))))..)))).....)))))))))))).)).-..))........ ( -29.80) >consensus GGGAAAACCGUCUACACAGAAAAAAACAUUACGAUCUCUUGUGGCUACUUAAUGCAAGAAAUUCAUGUUGAUUAUCACCAUGUUAUAGCAAUU_UUUUCUGUGCAGCACGGCAGCUAAUC .((....((((((.(((((((((.............(((((((.........)))))))....((((.((.....)).))))............))))))))).)).))))...)).... (-19.20 = -20.20 + 1.00)
Location | 1,063,059 – 1,063,178 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.42 |
Mean single sequence MFE | -35.78 |
Consensus MFE | -27.05 |
Energy contribution | -27.54 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -3.44 |
Structure conservation index | 0.76 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1063059 119 - 22224390 GAUUAGCUGCCGUGCUGCACAGAAAA-AAUUGCUAUAACAUGGUCAUAAUCAACAUGAAUUUCUUGCGUUCAGUAGCCACAAGAGAUCGUAAUGUUUUUUUCUGUGUAGACGUUUUCCCC ..........(((.((((((((((((-((((((.....((((...........)))).((((((((.((......))..)))))))).)))))...))))))))))))))))........ ( -31.00) >DroSec_CAF1 12069 119 - 1 GAUUAGCUGCCGUGCUGCACAGAAAA-AAUUGACAUAACAUGGUGAUAAUCAACAUGAAUUUCUUGCAUUAAAUAGCCACAAGAGAUCGUAAAGUUUUUUUCUGUGUAGACGGUUUUCCC ........(((((.((((((((((((-((...((....((((.((.....)).)))).((((((((.............)))))))).)).....)))))))))))))))))))...... ( -35.62) >DroSim_CAF1 13017 119 - 1 GAUUAGCUGCCGUGCUGCACAGAAAA-AAUUGACAUAACAUGGUGAUAAUCAACAUGAAUUUCUUGCAUAAAGUAGCCGCAAGAGAUCGUAAAGUUUUUUUCUGUGUAGACGGUUUUCCC ........(((((.((((((((((((-((...((....((((.((.....)).)))).(((((((((...........))))))))).)).....)))))))))))))))))))...... ( -39.60) >DroYak_CAF1 14438 119 - 1 GAUUAGCUGCUG-GCUGCACAGAAAAAAAAUGCUCUAAUGUGGUGAUAAUCAACAUGAAUCUCUACCAUUUAGUAACCAAAAGAGAUGGUUAUGUUUUUUUCUGUGUAGGCGGUUUUCCC ........((((-.(((((((((((((((.....((((.(((((((.(.((.....)).).)).)))))))))((((((.......))))))..))))))))))))))).))))...... ( -36.90) >consensus GAUUAGCUGCCGUGCUGCACAGAAAA_AAUUGACAUAACAUGGUGAUAAUCAACAUGAAUUUCUUGCAUUAAGUAGCCACAAGAGAUCGUAAAGUUUUUUUCUGUGUAGACGGUUUUCCC ........(((((.((((((((((((............((((.((.....)).)))).((((((((.............))))))))..........)))))))))))))))))...... (-27.05 = -27.54 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:10 2006