| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,122,780 – 9,122,888 |
| Length | 108 |
| Max. P | 0.652859 |
| Location | 9,122,780 – 9,122,888 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.45 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.32 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9122780 108 - 22224390 GCUUUGUCU----UUUUAGCAACUGGAAACAAGGUUUGCGGACAUGUUCUGCAUGCUGCUCACUUCGCUAAGCAGCUACACCAACUUAGCUGCACCGAAUCCUAUAAACAAU ...((((..----..(((((...((....))((((..((((.((((.....))))))))..)))).)))))(((((((........)))))))..............)))). ( -31.60) >DroSec_CAF1 4020 108 - 1 GCUUUUUCU----UUUUAGCAACUGGAAACAAGGUUUGCGGACAUGUUCUGCAUGCUGCUCACUUCGCUGAGCAGCUACACCAACUUGGCUGCACCGAAUCCUGUGAACAAU ((...(((.----..(((((...((....))((((..((((.((((.....))))))))..)))).)))))(((((((........)))))))...)))....))....... ( -31.50) >DroSim_CAF1 4016 108 - 1 GCUUUCUCU----UUUUAGCAACUGGAAACAAGGUUUGCGGACAUGUUCUGCAUGCUGCUCACUUCGCUGAGCAGCUACACCAACUUGGCUGCACCGAAUCCUGUGAACAAU (..(((...----..(((((...((....))((((..((((.((((.....))))))))..)))).)))))(((((((........)))))))...)))..)((....)).. ( -31.50) >DroEre_CAF1 4134 108 - 1 GCUUGCUCU----UUUUAGCAACUGGAGACACGGUUUGCGGACAUGUUCUGCAUGCUGCUGACCUCGCUGAGCAGCUACACCAACUUGGCCGCACCAAAUCCUGUGAAUUAU (((.((((.----....(((...((....)).((((.((((.((((.....)))))))).))))..))))))))))..(((....((((.....)))).....)))...... ( -33.00) >DroYak_CAF1 4149 108 - 1 GCUUGCUCU----UUUCAGCAACUGGAGGCACGGUUUGCGGACAUGUUUUGCAUGCUACUCACUUCGCUGAGCAGCUACACCAACUUAGCCGCACCAAAUCCCGUGCAUAAU ..(((((..----....)))))......((((((..(((((....(((......(((.((((......)))).)))......)))....))))).......))))))..... ( -29.70) >DroAna_CAF1 4041 112 - 1 GCCAUCUCUUCUAUUUCAGCAACUGGAGCAGCGUUUCCCGGACAUGUUCAGCAUGUUGCUCACCUCCCUGAGCAGCUACACGAACCUGGCUGCUCCCAAUCCUCCCGUGAAC ........................(((((((((((.....)))..((((.....((((((((......)))))))).....))))...))))))))................ ( -31.70) >consensus GCUUUCUCU____UUUUAGCAACUGGAAACAAGGUUUGCGGACAUGUUCUGCAUGCUGCUCACUUCGCUGAGCAGCUACACCAACUUGGCUGCACCGAAUCCUGUGAACAAU ...............(((((...((....)).(((..((((.((((.....))))))))..)))..)))))(((((((........)))))))................... (-24.23 = -24.32 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:36 2006