Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,111,879 – 9,111,974 |
Length | 95 |
Max. P | 0.840868 |
Location | 9,111,879 – 9,111,974 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 70.78 |
Mean single sequence MFE | -27.14 |
Consensus MFE | -18.52 |
Energy contribution | -18.64 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.33 |
Structure conservation index | 0.68 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9111879 95 + 22224390 UCCAAGGAAUUCCAGUUUUGUGCUGGAAAGUAGGGAAUGGACUCCGUUUGAAAUGCAACCC---------------UGGCGCAUAAGUGGGCGCAAGCGCACAUAAUUUG .(((.((..(((((((.....))))))).(((..((((((...))))))....)))..)).---------------))).......(((.((....)).)))........ ( -29.80) >DroSec_CAF1 3106 79 + 1 UCCAAGGAAUUCCAGUUUUGCGCUGGAAAG----------------UUUGAAAUGCAACCC---------------UGUCGCAUAAGUGUACGCAAGCGCACAUGAUUUG ..((((...(((((((.....)))))))..----------------))))..((((.((..---------------.)).))))..(((..(....)..)))........ ( -19.30) >DroSim_CAF1 3191 79 + 1 UCCAAGGAAUUCCAGUUUUGCGCUGGAAUG----------------UUUGAAAUGCAACCC---------------UGGCGCAUAAGUGUGCGCAAGCGCACAUGAUUUA .....((....)).....((((((((..((----------------(.......)))..))---------------.))))))...((((((....))))))........ ( -27.10) >DroEre_CAF1 3241 107 + 1 UCCAUGGAAUUCCAGUUUCACGCUGGAAAGUAGGCAACGGACUUCGCUUGAAAUGCAACCU---CUCGAACUCAAAUGUCGCGUAAGUGUGCGCAGGCGCAACCGAAUAU (((......(((((((.....)))))))....(....))))...((((((....(((..((---..((.((......))..))..))..))).))))))........... ( -26.60) >DroYak_CAF1 3217 110 + 1 UUCAAGGAAUUCCAGUUUUACGCUGGAAAGUAGGCAACGGACUUCGCUUGCAAUGCAGCCCUGCUUUAAACUCAAAUGGCGCGUAAUUGUGCGCAAGCGCAACCGAAUUU .....((..(((((((.....)))))))(((.(....)..))).(((((((...(((....)))..............(((((....))))))))))))...))...... ( -32.90) >consensus UCCAAGGAAUUCCAGUUUUGCGCUGGAAAGUAGG_AA_GGACU_CGUUUGAAAUGCAACCC_______________UGGCGCAUAAGUGUGCGCAAGCGCACAUGAUUUG .........(((((((.....)))))))........................((((........................))))..((((((....))))))........ (-18.52 = -18.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:30 2006