Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,107,866 – 9,107,986 |
Length | 120 |
Max. P | 0.839355 |
Location | 9,107,866 – 9,107,986 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.00 |
Mean single sequence MFE | -46.78 |
Consensus MFE | -36.23 |
Energy contribution | -36.63 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.27 |
Mean z-score | -1.92 |
Structure conservation index | 0.77 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9107866 120 - 22224390 UCUGUCCCCAAAUGCCAACACAACAAUGCGGCGGUCCAACGGGAAUUGGCUGCCGUGGCGGCCGCGGCAGCCGUGGCUCGCCGGAAGAAAAGCAGCUGGCAAUCGCAGGCACAGUCUCAA .((((((.....(((((.(........(((((((.((((......)))))))))))(((((((((((...))))))).))))............).)))))......)).))))...... ( -49.30) >DroSec_CAF1 19512 120 - 1 UCUGUGCACAAAUGCCGACACAACAAUGCGGCGAUCCAACGGGAAUUGGCCGCCGUGGCGGCCGCGGCAGCCGUGGUUCGCCGGAAGAAAAGCACAUGGCAAUCGCAGGCAAAGUCUCAA .((.(((.....(((((.((......))))))).(((....)))...((((((....))))))((((..(((((((((...(....)...))).))))))..))))..))).))...... ( -45.90) >DroSim_CAF1 15812 120 - 1 UCUGUGCACAAAUGCCGACACAACAAUGCGGCGAUCCAACGGGAAUUGGCCGCCGUGGCGGCCGCGGCAGCCGUGGUUCGCCGGAAGAAAAGCACAUGGCAACCGCAGGCAAAGUCUCAA .((.(((.....(((((.((......))))))).(((....)))...((((((....))))))((((..(((((((((...(....)...))).))))))..))))..))).))...... ( -48.40) >DroEre_CAF1 12773 120 - 1 ACUGUGCACAAAUGCCGACACAACCAAGUGCAGAUCCAACGGGAAUUGGCUGCCGUGGCGGCCGUUGCAACUGUGCCUCGGCGCAAGAAAAGCACCUGGCAAUCGCAGGCCCAGGCGCAA .((.(((......(((((((((......(((((.(((....)))...((((((....)))))).)))))..))))..))))))))))....((.((((((........).))))).)).. ( -42.60) >DroYak_CAF1 13119 111 - 1 ACUGCGCAAAAAUGCCGCCACAACCAUGUGCCCAUCCAACGGGAAUUGGCUGCCGUGGCAGC---------GGUGGCUCGGCGCAAGAAGAGCACCUGGCAAUCGCAGGCGCAGACGCAA .((((((.....((((((..((.(((....(((.......)))...))).))..))))))((---------(((.(((.((.((.......)).)).))).)))))..))))))...... ( -47.70) >consensus UCUGUGCACAAAUGCCGACACAACAAUGCGGCGAUCCAACGGGAAUUGGCUGCCGUGGCGGCCGCGGCAGCCGUGGCUCGCCGGAAGAAAAGCACCUGGCAAUCGCAGGCACAGUCUCAA .((((((.....(((((...........((((((.(((.(((....(((((((....)))))))......)))))).)))))).............))))).......))))))...... (-36.23 = -36.63 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:28 2006