Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,062,903 – 1,063,019 |
Length | 116 |
Max. P | 0.639144 |
Location | 1,062,903 – 1,063,019 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -13.74 |
Energy contribution | -14.68 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.13 |
Mean z-score | -1.82 |
Structure conservation index | 0.63 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1062903 116 + 22224390 AACGUAUUGGAAACCCGAAGGCAGACCUUUAU----GCAGAAUGCUGUAAGGCAUUCAGAUAGAUUACUAACGCAAUAUUACAAUCAUUUAAAAUCCAAGCCACCAAUAAACUUCACUAU ....((((((......(((((....))))).(----((.(((((((....))))))).(.(((....))).))))............................))))))........... ( -22.10) >DroSec_CAF1 11913 116 + 1 AACUUAUUGGAAACCCGAAGGCAUCCCUUUAU----GCAGAAUGCUGUAAGGCAUUCAGACAGAUUACUAACGCAAUAUUACAAUCAUCCAAAAUUCAAGACACCAAUGAACUUCACUAU ...(((((((......(((((....))))).(----((.(((((((....)))))))....((....))...)))............................))))))).......... ( -21.00) >DroSim_CAF1 12861 116 + 1 AACUUAUUGGAAACCCGAAGGCAUCCCUUUAU----GCAGAAUGCUGUAAGGCAUUCAGACAGAUUACUAACGCAAUAUUACAAUCAUCCAAAAUGCAAGACACCAAUGAACUUCACUAU ...(((((((......(((((....))))).(----((((((((((....))))))).....((((................))))........)))).....))))))).......... ( -23.19) >DroYak_CAF1 14287 113 + 1 AGUUUAUUUGAAACCCAGAGCCAGACCUUAAAGCAGGCAGAAUACUGCGAGGCAUACGGAAUUAUUGCUAUCGCAAUAUUAAAACUAUC-------CCAGCCACCAAUGAACUUCACACU ((((((((.(......................((((........))))..(((....(((..((((((....)))))).........))-------)..))).).))))))))....... ( -20.90) >consensus AACUUAUUGGAAACCCGAAGGCAGACCUUUAU____GCAGAAUGCUGUAAGGCAUUCAGACAGAUUACUAACGCAAUAUUACAAUCAUCCAAAAU_CAAGACACCAAUGAACUUCACUAU ...(((((((......(((((....)))))......((.(((((((....)))))))((........))...)).............................))))))).......... (-13.74 = -14.68 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006