Locus 3397

Sequence ID X_DroMel_CAF1
Location 9,087,988 – 9,088,087
Length 99
Max. P 0.571434
window5560

overview

Window 0

Location 9,087,988 – 9,088,087
Length 99
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 74.02
Mean single sequence MFE -36.55
Consensus MFE -23.20
Energy contribution -23.90
Covariance contribution 0.70
Combinations/Pair 1.32
Mean z-score -1.17
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.571434
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9087988 99 - 22224390
CCGGUGCCGUGCAGAAGCUGCCGCUGGAUAUGCGUAUGCAGCUGCAGCAGAUGAAGCUGUCCGAACGGGUCAGCGAACUGAUAGCCGCCGGCGAGAGG---------A
((((((.(...(((..(((((.((((.(((....))).)))).))))).......((((.((.....)).))))...)))...).))))))(....).---------. ( -42.40)
>DroPse_CAF1 484 105 - 1
CCCAGGCUCUGCAGAAGCUGCCGCUGGAACUGCGCCAUCAGUUGCAACAGCUCAAGCUGUCCGAGCGCGUCUUCGAGCUGAUGAACAUGGAU---CGCAACUCGAACA
....(((...((((.(((....)))....))))))).((((((((..((((....))))((((.(..((((........))))..).)))).---.)))))).))... ( -33.60)
>DroSim_CAF1 858 99 - 1
CCGGUGCCGUGCAGAAGCUGCCGCUGGAUACGCGUAUGCAGCUGCAGCAGAUGAAGCUGUCCGAACGGGUCAGCGAACUGAUAGCCGCCGGUGAAAGG---------A
((((((.(...(((..(((((.((((.(((....))).)))).))))).......((((.((.....)).))))...)))...).)))))).......---------. ( -43.40)
>DroEre_CAF1 444 99 - 1
CCGGUGCCGUGCAGAAGCUGCCGCUGGAGACGCGCAUGCAGAUGCAGCAACUCAAGUUGUCCGAACGGGUUAGCGAACUGAUAGCCACCGGCGAAAAU---------A
(((((((((((((....(((((((.(....))))...)))).))).(((((....)))))....))))(((((....)))))...)))))).......---------. ( -34.70)
>DroYak_CAF1 2203 99 - 1
CCGGUGCCGUGCAGAAGCUGCCGUUAGAGACGCGUAUGCAGCUGCAGCAGCUCAAAUUGUCCGAACGGGUCAGCGAACUGAUAGCCACCGGCGAAAAG---------A
((((((.(...(((..(((((((((.(.((((.((.((.(((((...))))))).))))))).)))))..))))...)))...).)))))).......---------. ( -35.60)
>DroPer_CAF1 485 105 - 1
CCCAGGCUCUGCAGAAGCUGCCGCUGGAACUGCGCCAUCAAUUGCAACAGCUCAAGCUGUCCGAGCGCGUCUUCGAGCUGAUGAACAUGGAU---CGCAACUCGAACA
.....(((((((((..(.((.(((.......))).)).)..)))))(((((....)))))..)))).....((((((.((.(((.......)---)))).)))))).. ( -29.60)
>consensus
CCGGUGCCGUGCAGAAGCUGCCGCUGGAAACGCGCAUGCAGCUGCAGCAGCUCAAGCUGUCCGAACGGGUCAGCGAACUGAUAGCCACCGGCGAAAGG_________A
((((((.(...(((..(((((.((((............)))).))))).......((((.((.....)).))))...)))...).))))))................. (-23.20 = -23.90 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:22 2006