Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,070,264 – 9,070,361 |
Length | 97 |
Max. P | 0.511263 |
Location | 9,070,264 – 9,070,361 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.09 |
Mean single sequence MFE | -18.33 |
Consensus MFE | -9.43 |
Energy contribution | -9.68 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.51 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9070264 97 - 22224390 AAUUGAU--------------AAAAUUAAUAUAAAGUUUCCAUUCUGUUACGCAGCGUGGAAUCUCCCACUCUGCAUCAUG-----CGUUUCUUUCUAA----AAAAAAUUAAUAAAUAU ...((((--------------..............((..(......)..))((((.((((......)))).))))))))..-----.............----................. ( -14.30) >DroSec_CAF1 3440 100 - 1 AACUGAU--------------AAAAUGAACAUAAAGUUUCCAUUCUGUUAUGCAGUGUGGAAUCUUCC-CAUUGCAUCAUUUCUUUGGUUUCUUUCUAA----AA-AUAUUAUUAAAUAA ...((((--------------((.((......((((...(((....((.((((((((.(((....)))-)))))))).)).....)))...))))....----..-)).))))))..... ( -20.60) >DroSim_CAF1 3872 101 - 1 AACUGAU--------------AAAAUGAACAUAAAGUUUCCAUUCUGUUACACAGUGUGGAAUCUUCCACUUUGUAUAAUUUCUUUGGUUUCUUUCUAA----AA-ACAUUAAUAAAUAA (((..(.--------------.((((....(((((((((((((.(((.....))).))))))......)))))))...))))..)..))).........----..-.............. ( -17.50) >DroEre_CAF1 6681 115 - 1 AAGUGAUAUUAUUUACAUAACAACUUGAUUACAAAGUUUCCAUUCUGUUACGCAGUUUGGAAUGUAACCCUUUGAAUCAUG-----CGUUUCUUUCAGAUGAGAAUAAAUUAUUAAAUAA .((((((.((((((.(((...(((.(((((.(((((.(((((..(((.....)))..))))).......))))))))))..-----.)))........))).))))))))))))...... ( -20.90) >consensus AACUGAU______________AAAAUGAACAUAAAGUUUCCAUUCUGUUACGCAGUGUGGAAUCUUCCACUUUGCAUCAUG_____CGUUUCUUUCUAA____AA_AAAUUAAUAAAUAA .....................................((((((.(((.....))).)))))).......................................................... ( -9.43 = -9.68 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:13 2006