Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,069,275 – 9,069,368 |
Length | 93 |
Max. P | 0.532482 |
Location | 9,069,275 – 9,069,368 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.80 |
Mean single sequence MFE | -17.93 |
Consensus MFE | -13.21 |
Energy contribution | -13.01 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.67 |
Structure conservation index | 0.74 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9069275 93 - 22224390 AGAACUGAAAACCAAACCCAAUCUAUAAUUCGCUAAUGAAUAUUAUGUAUGUUCGCGGUUCUCACGCUUUU-CAUUUGGCGUGAAAAUUAAGCA .((((((..(((........((.((((((...(....)...)))))).)))))..))))))(((((((...-.....))))))).......... ( -18.50) >DroSec_CAF1 2435 91 - 1 AGAAUUGAAAACCAAAACCAAUGUAUAAUUCGCUAAUGAAU--UAU-UAAGUUCGCGGUUCACACGCUUUUCCAUUUGGCGUGAAAAUUAAGCA .((((((..(((....((....))((((((((....)))))--)))-...)))..)))))).((((((.........))))))........... ( -17.20) >DroSim_CAF1 2854 91 - 1 AGAACUGAAAACCAAAACCAAUGUAUAAUUCGCUAAUGAAU--UAU-UAAGUUCGCGGUUCACACGCUUUUCCAUUUGGCGUGAAAAUUAAGCA .((((((..(((....((....))((((((((....)))))--)))-...)))..)))))).((((((.........))))))........... ( -19.60) >DroEre_CAF1 5750 91 - 1 AGAACUGUAGCCCAAAACCAAUCAAUAAUUCGCUAAUGAAUA-AAU-UAAGUUCUCGGUUCACACGCUUUU-CAUUUGGCGUGAAAAUUAAGCA .((((((((((....................))))..((((.-...-...)))).)))))).((((((...-.....))))))........... ( -17.45) >DroYak_CAF1 2882 91 - 1 AGAACUGAACCCCAAAACCAAUCUAUAAUUCGCUAAUGAAUA-UAU-AAAGUGCUCGGUUCACACGCUUUU-CAUUUGGCGUGAAAAUUAAACA .(((((((..........((...(((((((((....))))).-)))-)...)).))))))).((((((...-.....))))))........... ( -16.90) >consensus AGAACUGAAAACCAAAACCAAUCUAUAAUUCGCUAAUGAAUA_UAU_UAAGUUCGCGGUUCACACGCUUUU_CAUUUGGCGUGAAAAUUAAGCA .((((((..(((...............(((((....))))).........)))..)))))).((((((.........))))))........... (-13.21 = -13.01 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006