Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,061,404 – 1,061,499 |
Length | 95 |
Max. P | 0.911723 |
Location | 1,061,404 – 1,061,499 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 84.83 |
Mean single sequence MFE | -41.35 |
Consensus MFE | -30.51 |
Energy contribution | -32.07 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.18 |
Structure conservation index | 0.74 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1061404 95 - 22224390 GGUCCAGCUCACGAAUGGGUUGCCAAAGGUCUUCCCGCAGCGGAAGCUGUGACUCAAAGCGAUUGGAAUGCUGCU---------------------GCUGGUGCUGUUGGAAGCCA ((..(((((((....)))))))))...((.(((((((((((....))))))......(((.((..(.........---------------------.)..)))))...))))))). ( -33.80) >DroSec_CAF1 10440 95 - 1 GGUCCAGCUCACGAAUGGGUUGCCAAAGGUCUUCCCGCAGCGGAAGCUGUGUCUCAAAGCGAUUGGGAUGCUGCU---------------------GCUGCUGCUGUUGGAGGCCA ((..(((((((....)))))))))...(((((((..(((((((.(((.(((((((((.....))))))))).)))---------------------.)))))))....))))))). ( -44.50) >DroSim_CAF1 11375 95 - 1 GGUCCAGCUCACGAAUGGGUUGCCAAAGGUCUUCCCGCAGCGGAAGCUGUGUCUCAAAGCGAUUGGGAUGCUGCU---------------------GCUGCUGCUGUUGGAGGCCA ((..(((((((....)))))))))...(((((((..(((((((.(((.(((((((((.....))))))))).)))---------------------.)))))))....))))))). ( -44.50) >DroYak_CAF1 12758 116 - 1 GGUCCAGUUCACGAAUAGGUUGCCAAAGGUCUUCCCGCAGCGGUAGCUGUUGCUCAAAGCGAUUGUGAUGCUGCUGUGGCCGGAACUGCUCAUGUUGCUGCUGCUGUUGGAAACCA (((((.(((....))).))..)))...(((.((((.(((((((((((.(((((.....))))).((((.((..(((....)))....))))))...))))))))))).))))))). ( -42.60) >consensus GGUCCAGCUCACGAAUGGGUUGCCAAAGGUCUUCCCGCAGCGGAAGCUGUGUCUCAAAGCGAUUGGGAUGCUGCU_____________________GCUGCUGCUGUUGGAAGCCA ((..(((((((....)))))))))...((.(((((.(((((((.(((.(((((((((.....))))))))).))).........................))))))).))))))). (-30.51 = -32.07 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:07 2006