Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,051,710 – 9,051,821 |
Length | 111 |
Max. P | 0.926418 |
Location | 9,051,710 – 9,051,821 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 73.21 |
Mean single sequence MFE | -48.40 |
Consensus MFE | -21.50 |
Energy contribution | -22.53 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.33 |
Mean z-score | -2.16 |
Structure conservation index | 0.44 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9051710 111 - 22224390 GAGGCCGAGAAGCAGCGCAAGCUGGCCGAACUGCAGGCCAAGGCCGCCGAGGCUGACAAGUUGCUCGAGGUCCUGCAGAAGGAGCAGUCGGAGCAGUCGGAG-CAGGCCGAG- ..((((......((((....)))).((((.((((.(((....))).((((((((....))))......(.((((.....)))).)..)))).))))))))..-..))))...- ( -49.70) >DroPse_CAF1 73 96 - 1 GAGGCCGAGAAGCAGCGCAAGCUGGCCGAGCUCCAGGCGAAGGCAGCCGAGGCGGACAAGCUACUGGCCGCCCUUGAGGAGG---------------CGGCU-CGGGCCGAG- ..((((..((..((((....))))((((..((((...(((.(((.((((.(((......)))..)))).))).))).)))).---------------)))))-).))))...- ( -48.30) >DroEre_CAF1 87 103 - 1 GAGGCCGAGAAGCAGCGCAAGCUGGCCGAGCUGCAGGCCAAGGCCGCCGAGGCUGACAAGCUGCUCGAGGUUCUCGAGAAGGAGCAGG---------CCGAG-CAGGCGGAGC ..((((......((((....))))((......)).))))....(((((..((((....))))(((((..(((((......)))))...---------.))))-).)))))... ( -45.80) >DroMoj_CAF1 55 102 - 1 CUGGCCGAAAAGCAGCGCCAGCUGGCCGAGCUGGAGCAGAAGGCGGCCGAGGCGGACAAGCUGCUAGCCACGCUAGCCGUG--GCCGA---CGA-GUCCGCUGCAGGC----- ..(((((.....(.((.((((((.....)))))).)).)....)))))(.(((((((.....((((((...))))))(((.--....)---)).-))))))).)....----- ( -46.40) >DroAna_CAF1 79 99 - 1 GAGGCCGAGAAGCAGCGUAAGCUGGCGGAGCUCCAGGCGAAGGCCGCCGAGGCGGACAAGAUCCUGGCGGCCUUCGAGGCUGAGCAAG---------CGGCC-GAGGCG---- ..((((......((((....))))((...((((.((.(((((((((((.(((..........))))))))))))))...))))))..)---------)))))-......---- ( -52.20) >DroPer_CAF1 80 96 - 1 GAGGCCGAGAAGCAGCGCAAGUUGGCCGAGCUCCAGGCGAAGGCAGCCGAGGCGGACAAGCUACUGGCCGCCCUCGAGGAGG---------------CGGCU-CGGGCCGAG- ..((((..((..((((....))))((((..((((...(((.(((.((((.(((......)))..)))).))).))).)))).---------------)))))-).))))...- ( -48.00) >consensus GAGGCCGAGAAGCAGCGCAAGCUGGCCGAGCUCCAGGCGAAGGCCGCCGAGGCGGACAAGCUGCUGGCCGCCCUCGAGGAGG_GCAG__________CGGCU_CAGGCCGAG_ ...(((......((((....))))(((........)))((.((((((...(((......)))....)))))).))..............................)))..... (-21.50 = -22.53 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:10 2006