Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,043,822 – 9,043,942 |
Length | 120 |
Max. P | 0.709174 |
Location | 9,043,822 – 9,043,942 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -50.80 |
Consensus MFE | -32.20 |
Energy contribution | -30.74 |
Covariance contribution | -1.46 |
Combinations/Pair | 1.51 |
Mean z-score | -2.14 |
Structure conservation index | 0.63 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9043822 120 - 22224390 GAUGCAGAGCAGUGUGAAACAGGUGUUCCUCGGCGGCGAUCUCGCUGGAGUGGCCAACACCACGGUGGAGUCGGUCAAUGAUGGCAAGGUGGCCGCCUGGAGCAUUCAUUGUCAACUGCA ........(((((.(((....((((((((..((((((.((((.((((...(((((.((.((.....)).)).)))))....)))).)))).)))))).)))))))).....)))))))). ( -54.80) >DroVir_CAF1 1932 120 - 1 GAUGCAGAGCAGCGUGCCACAGGUCUUCAUUGGCGGUGACUUGGCUGGUGUGGCCAACACCACCGUGGAGUCGGUCAACGAUGGCAAAGUGGCCGCCUGGAGCAUCCACUGCCAGCUGCA ..(((((.((((.((((..(((((((((((.((.((((..((((((.....)))))))))).))))))))(((.....))).(((......))))))))..))))...))))...))))) ( -52.50) >DroGri_CAF1 1731 120 - 1 GAUGCAGAGCAGUGUGCCCCAGGUCUUCCUUGGCGGUGAUCUGGGUGGUGUGGCUAACACAACCGUUGAGUCGGUCAACGAUGGCAAAGUGGCUGCCUGGAGCAUCCACUGUCAGUUGCA ..(((((.(((((((((.((((((..(((((....((.(((..(((.((((.....)))).)))(((((.....)))))))).)).))).))..)))))).)))..))))))...))))) ( -47.10) >DroWil_CAF1 1721 120 - 1 GCUGCAGAGUAGUGUGGCCAAUGUGUUCCUGGGUGGUGAUCUUGCCGGUGUGGCAAACACAACUGUCGAGUCGGUAAACGAUGGCAAAGUUGCAGCCUGGAGUAUACAUUGUCAAUUGAG ((..((......))..))((((((((.((..(((.(..(..(((((((((((.....))).))).....((((.....)))))))))..)..).)))..).).))))))))......... ( -42.70) >DroAna_CAF1 2244 120 - 1 UAUGCAGAGCAGCCUGAAACAGGUUUUCCUGGGUGGAGACCUGGCGGGCGUAGCUAAUACCACAGUGGAGUCGGUCAACGACGGCAAGGUGGCCGCCUGGGGCAUUCACUGCCAGCUGCA ..((((((((.(((((...(((((((.((.....))))))))).)))))...))).......(((((((((((.....)))).((.((((....))))...)).)))))))....))))) ( -51.60) >DroMoj_CAF1 2587 120 - 1 CAUGCAGAGCAGCGUGCCGCAGGUCUUCCUGGGCGGUGAUCUGGCCGGCGUGGCCAAUACCACCGUGGAGUCGGUCAACGAUGGCAAAGUCGCCGCCUGGAGCAUUCACUGCCAGCUGCA ..(((((.((((.(((((.((((....))))(((((((((...((((.(((((((.((.((.....)).)).)))).))).))))...)))))))))..).))))...))))...))))) ( -56.10) >consensus GAUGCAGAGCAGCGUGCCACAGGUCUUCCUGGGCGGUGAUCUGGCUGGUGUGGCCAACACCACCGUGGAGUCGGUCAACGAUGGCAAAGUGGCCGCCUGGAGCAUUCACUGCCAGCUGCA ........(((((........(((.((((..((((((.((...((((.(((((((.((.((.....)).)).)))).))).))))...)).)))))).)))).)))........))))). (-32.20 = -30.74 + -1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:07 2006