Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,008,475 – 9,008,595 |
Length | 120 |
Max. P | 0.919454 |
Location | 9,008,475 – 9,008,595 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -30.03 |
Energy contribution | -30.81 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.16 |
Structure conservation index | 0.96 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9008475 120 - 22224390 UAGCACGUUCUGGGACAUUAAAAACAACCAGAAGACCGCCAAUUUGAUUGGAGUCGAUAAUUAUUGGAUUAAACAAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG ..((((.((((((..............))))))....(((((((((((.(((((.(.((((((((..........)))))))).....).))))).))))))...)))...)).)))).. ( -27.94) >DroEre_CAF1 2857 119 - 1 AAGCACGU-CUGGGGCACAAAAAACAACCAGAAGACCGCCAACUCGAUUGGAGUCGAUAAUUAUUGGAUUAAACUAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG ..((((.(-((((..............))))).....((....(((((.(((((.(.((((((((((......)))))))))).....).))))).)))))((....))..)).)))).. ( -32.24) >DroYak_CAF1 3408 120 - 1 UAGCACGUUCUGGGGCACAAAAAACAACCAGAAGACCGCCAAUUCGAUUGGAGUCGAUAAUUAUUGGAUUAAACUAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG ..((((.((((((..............))))))....(((((((((((.(((((.(.((((((((((......)))))))))).....).))))).))))))...)))...)).)))).. ( -33.94) >consensus UAGCACGUUCUGGGGCACAAAAAACAACCAGAAGACCGCCAAUUCGAUUGGAGUCGAUAAUUAUUGGAUUAAACUAAUAAUUACUUUACUGCUCCCGUCGAACUUUUGUAUGCAGUGCAG ..((((.((((((..............))))))....(((((((((((.(((((.(.((((((((((......)))))))))).....).))))).))))))...)))...)).)))).. (-30.03 = -30.81 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:02 2006