Locus 338

Sequence ID X_DroMel_CAF1
Location 1,059,712 – 1,059,803
Length 91
Max. P 0.828964
window514 window515

overview

Window 4

Location 1,059,712 – 1,059,803
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 98.53
Mean single sequence MFE -14.07
Consensus MFE -13.67
Energy contribution -13.67
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.97
SVM decision value 0.71
SVM RNA-class probability 0.828964
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1059712 91 + 22224390
AGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA
(((((((((.((.(((....)))))..................((((((....))))))...))))...)))))................. ( -14.40)
>DroSec_CAF1 8755 91 + 1
AGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAGCCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA
(((((((((.((.(((....)))))..................((((((....))))))...))))...)))))................. ( -14.40)
>DroSim_CAF1 9692 91 + 1
AGUUUGGCCCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA
((((((((..((.(((....)))))..................((((((....))))))....)))...)))))................. ( -13.40)
>consensus
AGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA
((((((((..((.(((....)))))..................((((((....))))))....)))...)))))................. (-13.67 = -13.67 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 1,059,712 – 1,059,803
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 98.53
Mean single sequence MFE -26.97
Consensus MFE -26.97
Energy contribution -26.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 1.00
SVM decision value 0.13
SVM RNA-class probability 0.600216
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1059712 91 - 22224390
UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGUUUACUAUUUGGGCGGUGGCCUCAGAGCCAAACU
....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) ( -27.10)
>DroSec_CAF1 8755 91 - 1
UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGCUUACUAUUUGGGCGGUGGCCUCAGAGCCAAACU
....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) ( -27.10)
>DroSim_CAF1 9692 91 - 1
UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGUUUACUAUUUGGGCGGUGGCCUCAGGGCCAAACU
....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) ( -26.70)
>consensus
UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGUUUACUAUUUGGGCGGUGGCCUCAGAGCCAAACU
....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) (-26.97 = -26.97 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:06 2006