Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,059,712 – 1,059,803 |
Length | 91 |
Max. P | 0.828964 |
Location | 1,059,712 – 1,059,803 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 98.53 |
Mean single sequence MFE | -14.07 |
Consensus MFE | -13.67 |
Energy contribution | -13.67 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.97 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1059712 91 + 22224390 AGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA (((((((((.((.(((....)))))..................((((((....))))))...))))...)))))................. ( -14.40) >DroSec_CAF1 8755 91 + 1 AGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAGCCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA (((((((((.((.(((....)))))..................((((((....))))))...))))...)))))................. ( -14.40) >DroSim_CAF1 9692 91 + 1 AGUUUGGCCCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA ((((((((..((.(((....)))))..................((((((....))))))....)))...)))))................. ( -13.40) >consensus AGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGAUUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCACCCUCAUA ((((((((..((.(((....)))))..................((((((....))))))....)))...)))))................. (-13.67 = -13.67 + -0.00)
Location | 1,059,712 – 1,059,803 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 98.53 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -26.97 |
Energy contribution | -26.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 1.00 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1059712 91 - 22224390 UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGUUUACUAUUUGGGCGGUGGCCUCAGAGCCAAACU ....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) ( -27.10) >DroSec_CAF1 8755 91 - 1 UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGCUUACUAUUUGGGCGGUGGCCUCAGAGCCAAACU ....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) ( -27.10) >DroSim_CAF1 9692 91 - 1 UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGUUUACUAUUUGGGCGGUGGCCUCAGGGCCAAACU ....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) ( -26.70) >consensus UAUGAGGGUGGUGGUGGAGUUUUGCGGCUUAUUCGAUUGAUUAAUCGAGGGAUGGGGUUUACUAUUUGGGCGGUGGCCUCAGAGCCAAACU ....((..((((..((..(((..((.((((.(((((((....)))))))((((((......)))))))))).)))))..))..))))..)) (-26.97 = -26.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:06 2006