Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,997,685 – 8,997,792 |
Length | 107 |
Max. P | 0.957330 |
Location | 8,997,685 – 8,997,792 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.34 |
Mean single sequence MFE | -31.45 |
Consensus MFE | -19.53 |
Energy contribution | -21.84 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.10 |
Mean z-score | -3.73 |
Structure conservation index | 0.62 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8997685 107 - 22224390 UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACGAAUU---GUAUUUUCUGCGAAAGCGAGACGGGAAUAGUGUGUACGAGCGGGC----------GGGA ............(((((((((....))))))))).......(((..............---.((((..((((....)))....)..))))((.(((....))).))----------))). ( -27.40) >DroSec_CAF1 9462 120 - 1 UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACGAAUUGUUGUAUUUUCUGCGAAAGCGAGACGGGAGUAGUGUCUUCGAGAGGGGUGGUGGGGUGGAGA ............(((((((((....))))))))).......((((.((((.((((....))))..(((((.((((..((..((....))..))..))))))))))))).))))....... ( -37.60) >DroEre_CAF1 9609 112 - 1 UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACAAAUUGUUUUAUUUUCUGCGAAAGCGGGACGGAAAUAGUGUGUGUGAGAGGAA------GG--GGGA ............(((((((((....))))))))).......(((....((.(((.((((((((...((((((....))))))..))))))))...)))....))..------..--))). ( -34.60) >DroYak_CAF1 11248 112 - 1 UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACAAAUUGUUUUAUUUUCUGCGAAAACGGAAUGGAAGUAGUGGGUGCGAAAGGGA------GG--UGGA ............(((((((((....)))))))))............((((.((..((((((((...(((((......)))))..))))))))..)).(....)...------))--)).. ( -26.20) >consensus UAAAAAAUAAACGGUUUUUUCUAUAGAAGAAACCAAAAAAACCCAACACCAACAAAUUGUUGUAUUUUCUGCGAAAGCGAGACGGAAAUAGUGUGUGCGAGAGGGA______GG__GGGA ............(((((((((....))))))))).......(((.......(((.((((((((...((((((....))))))..)))))))).)))......)))............... (-19.53 = -21.84 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:54 2006