Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,996,725 – 8,996,845 |
Length | 120 |
Max. P | 0.704722 |
Location | 8,996,725 – 8,996,845 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -56.90 |
Consensus MFE | -41.83 |
Energy contribution | -45.83 |
Covariance contribution | 4.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.74 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8996725 120 - 22224390 UGCCGCUGGCGGAGCUACUCCCCCAGCUACUGCGGCCUCGCCCAGCGGUGCUCCUCCAGCUGGUCCAGGUGGUGCUCCUGGUCCCGCUCCUGCCCCGGGCGUGGGAUACACUCCGGCUCC .((((((((.(((((..........((..(((.(((...))))))..))))))).))))).((.(((((.......)))))((((((.((((...)))).))))))......)))))... ( -54.80) >DroSec_CAF1 8497 117 - 1 UGCCGGUGGCGGCGCUACUCCCCCAGCUACGGCGGCCUCGCCCAGCGUUGCUCCUCCAGCUG---CCGGUGGUGCUCCUGGUCCCGCUCCUGCCCCGGGCGUGGGAUACACUCCGGCUCC .(((((.((.(((((((((....(((((..((.(((..(((...)))..))).))..)))))---..)))))))))))..(((((((.((((...)))).))))))).....)))))... ( -54.30) >DroEre_CAF1 8654 114 - 1 UGAAGGGGGCGGAGG---UCCACCAGUUACUGCUGCCUCGCCCAGCGGUGCUCCUCCAGCUG---CCGGAGGUGCUCCUGGUCCCGCUCCUGCACCGGGAGUGGGAUACACACCGCCUCC ....((((((((...---....((((..(((((((.......)))))))((.(((((.....---..))))).))..))))(((((((((((...)))))))))))......)))))))) ( -60.30) >DroYak_CAF1 10251 114 - 1 UGCCGGGGGCGGAGC---UCCCCCAGCUACUGCUGCCUCGCCCAGCGGUGCUCCUCCAGCUG---CCGGAGGUGCUCCUGGUCCCGCUCCUGCCCCGGCAGUGGGAUACACUCCGCCUCC ....((((((((((.---....((((..(((((((.......)))))))((.(((((.....---..))))).))..))))(((((((((......)).)))))))....)))))))))) ( -58.20) >consensus UGCCGGGGGCGGAGC___UCCCCCAGCUACUGCGGCCUCGCCCAGCGGUGCUCCUCCAGCUG___CCGGAGGUGCUCCUGGUCCCGCUCCUGCCCCGGGAGUGGGAUACACUCCGCCUCC ....((((((((((........((((..(((((((.......)))))))((.(((((..........))))).))..))))(((((((((((...)))))))))))....)))))))))) (-41.83 = -45.83 + 4.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:53 2006