Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,995,718 – 8,995,838 |
Length | 120 |
Max. P | 0.689211 |
Location | 8,995,718 – 8,995,838 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.54 |
Mean single sequence MFE | -52.55 |
Consensus MFE | -38.14 |
Energy contribution | -40.20 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.73 |
Structure conservation index | 0.73 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.689211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8995718 120 + 22224390 AGCCGCCAACGCAGCCAGGUCAGCCCGCUGCCACACCCGCUGGCCAAGAGCCGGCGUCGGCGGUACCAGCGCCAGCAGCUCCGCCCAAGGAGACACCGCCGGCUGUGAAGCCCGCUACAC (((.(.(..(((((((.((.(((....))))).....(((((((.....)))))))..((((((....((....)).(((((......)))).))))))))))))))..).).))).... ( -54.80) >DroSec_CAF1 7493 120 + 1 AGCCGCCAACGCAGCCGGGUCAGCCCGCUGCUACACCCGCUAGCCAAGAGCCGGCGGCGGCGGUACCAGCGCCAGCAGCUCCGCCCAAGGAGACACCGCCGUCUGUGAAGCCCGCUACAC .((((((...(((((.(((....)))))))).......(((.......))).))))))((((((....((....)).(((((......)))).)))))))....(((.((....)).))) ( -53.30) >DroEre_CAF1 7641 114 + 1 AGCCGCCAACGCAGCCGGGUCAGCCAGGUGCCACACCCGCUAGCCAAGAGGCGGCGGCAGCGGU------GCCAGCAGCUCCGCCCAAGGAGACUCCGCCGGCUGUGAAGCCAGCCACAC .((.((...(((((((((....((..((..((.(..(((((.(((....))))))))..).)).------.)).))((((((......)))).))...)))))))))..))..))..... ( -51.70) >DroYak_CAF1 9253 114 + 1 AGCCGCCAACGCAGCCGGGUCAGCCAGGUGCCACACCCGCUGCUCAAGAGGCGACGGCAGCGGC------UCCAGCAGCUCCGGCCAAGGAGACUCCGCCGGCUGUGAAGCCAACCACAC .((.(((..(((..(.(((.((((..((((...)))).)))))))..)..)))..))).))(((------(...(((((..((((..((....))..)))))))))..))))........ ( -50.40) >consensus AGCCGCCAACGCAGCCGGGUCAGCCAGCUGCCACACCCGCUAGCCAAGAGCCGGCGGCAGCGGU______GCCAGCAGCUCCGCCCAAGGAGACACCGCCGGCUGUGAAGCCAGCCACAC ....((...(((((((.(((((((..((((...)))).))))))).......(((((..(((((......))).))..((((......))))...))))))))))))..))......... (-38.14 = -40.20 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:48 2006