Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,993,854 – 8,993,959 |
Length | 105 |
Max. P | 0.632712 |
Location | 8,993,854 – 8,993,959 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.51 |
Mean single sequence MFE | -36.32 |
Consensus MFE | -16.70 |
Energy contribution | -17.12 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.14 |
Mean z-score | -1.91 |
Structure conservation index | 0.46 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8993854 105 - 22224390 CGGAGAACGCCUCCGAGCUGCAGGGCACGGAUGUGGCUUACAGCGUAGGUGACAUUCGGCU-------------AUUACAUCAUUCCAU--UGACCUGCUAAUCCUCGCGGGGUUUCCGC (((((...(((((((((..(((((((.(((((((.((((((...)))))).))))))))).-------------......(((......--)))))))).....)))).)))))))))). ( -44.40) >DroSec_CAF1 5640 102 - 1 CGGAGAACGCCUCCGAGCUGCAGGGCACGGAUGUGGCUUACAGCGUAGGUGACAUCCGCCU-------------GUUACAUCAUUCCAU--UGACC---UAAUCCUCGAGUUCUUUCCGC .((((.....))))((((((((((...(((((((.((((((...)))))).))))))))))-------------))....(((......--)))..---.........)))))....... ( -34.80) >DroSim_CAF1 7335 102 - 1 CGGAGAACGCCUCCGAGCUGCAGGGCACGGAUGUGGCUUACAGCGUAGGUGACAUCCGCCU-------------AUUACAUCAUUCCAU--UGACC---UAAUCCUCGAGCUCUUUCCGC .((((.....))))(((((..(((...(((((((.((((((...)))))).)))))))...-------------((((..(((......--)))..---)))))))..)))))....... ( -35.60) >DroEre_CAF1 5781 101 - 1 CGGAGAACGCCGCGGAGCUGCAGGGCUCGGAUGUGGCUUACAGUGUAGGUGUCAU-CGCCU-------------AUUACAUCAUUCAAU--UGAUC---UAAUCUUCGCGGGGUUUCCUC .(((((.(.((((((((.....((((...((((..((((((...))))))..)))-)))))-------------((((.((((......--)))).---)))))))))))).)))))).. ( -37.40) >DroYak_CAF1 7393 101 - 1 CGGAGAACGCCGCGGAGCUGCAGGGCACGGAUGUGGCGUACAGCGUAGGUGACAU-CGCCU-------------AUUACAUCAUUCAAU--UGAUC---UAAUCAUUGCGGCGUUUCCUC .(((((.((((((((.((((.(.(.(((....))).).).))))(((((((....-)))))-------------))((.((((......--)))).---))....))))))))))))).. ( -41.00) >DroPer_CAF1 7989 107 - 1 CCGAGAACGCCACAGACCUCAUUGGCACCGACGUGGCUUAUGGCGCAAGUGUCUU-CAGAUUUUCCACCCAAUGGUUACAUCACGCUAUAUGGUGU---UUAUU---------UUUUCUU ....((((((((.((.((.(.(((....))).).))))(((((((...((((..(-((..............)))..))))..)))))))))))))---))...---------....... ( -24.74) >consensus CGGAGAACGCCUCCGAGCUGCAGGGCACGGAUGUGGCUUACAGCGUAGGUGACAU_CGCCU_____________AUUACAUCAUUCCAU__UGACC___UAAUCCUCGCGGGGUUUCCGC .(((((..(((............)))...((((((((.....))..(((((.....)))))...............))))))...............................))))).. (-16.70 = -17.12 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:47 2006