Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,993,003 – 8,993,100 |
Length | 97 |
Max. P | 0.822948 |
Location | 8,993,003 – 8,993,100 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -12.79 |
Consensus MFE | -7.58 |
Energy contribution | -7.02 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -2.17 |
Structure conservation index | 0.59 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8993003 97 + 22224390 AAGAAAAGAAAAUAAUCACUACCUUCAUUUGUUUAUAAAACACCGAACAACAAUAGAAUUCAGAAAACAUAAAUCUGAAGAGCACGUGAAUAAACAU ...............((((.........((((((..........)))))).....(..((((((.........))))))...)..))))........ ( -10.50) >DroSec_CAF1 4851 92 + 1 AGGAAAA--AACGUAUCA---CCUUCUUUUGUUUAUAAAACACCGAACAAGAAUAGAAUUCAGAAAACAUAAAUCUGAAGAGCACGUGAAUGAACAU .......--.((((.((.---.((..((((((((..........))))))))..))..((((((.........))))))))..)))).......... ( -14.10) >DroSim_CAF1 6542 95 + 1 AGGAAAA--AACGUAUCACUACCUUCUUUUGUUUAUAAAACACCGAACAACAAUAGAAUUCAGAAAACAUAAAUCUGAAGAGCACGUGAAUAAACAU .......--.((((.((......((((.(((((...............))))).))))((((((.........))))))))..)))).......... ( -12.66) >DroEre_CAF1 4895 83 + 1 -------------AAUUGACACCUACUUUUGUUUACAAAACACUAAA-AACAAUACAAUUCAGAGAACAUAAAUCUGAAGAGUACGUGAAUAAACAU -------------......(((.(((((((((((............)-))))).....((((((.........))))))))))).)))......... ( -13.30) >DroYak_CAF1 6448 83 + 1 -------------GAUCACAACCUUCUUUUGUUUACAAAACACUGAA-AACAAUCCAAUUCAGAAAACAUAAAUCUGAAGAGCAUGUGAAUAAACAU -------------..(((((..(((...((((((.((......)).)-))))).....((((((.........)))))))))..)))))........ ( -13.40) >consensus A_GAAAA__AA__AAUCACUACCUUCUUUUGUUUAUAAAACACCGAACAACAAUAGAAUUCAGAAAACAUAAAUCUGAAGAGCACGUGAAUAAACAU ...........................(((((((((......................((((((.........))))))(....))))))))))... ( -7.58 = -7.02 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:46 2006