Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,058,732 – 1,058,824 |
Length | 92 |
Max. P | 0.537548 |
Location | 1,058,732 – 1,058,824 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 70.73 |
Mean single sequence MFE | -26.13 |
Consensus MFE | -10.75 |
Energy contribution | -12.35 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.14 |
Mean z-score | -1.72 |
Structure conservation index | 0.41 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1058732 92 + 22224390 ------------------------UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAAUUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCC ------------------------..((((((((.((((((((((....(((.(......).)))....))))).)))))...))))..((((...))))..)))).......... ( -26.20) >DroSec_CAF1 7751 92 + 1 ------------------------UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAACUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCA ------------------------..((((((((.((((((((((.....(((.......)))......))))).)))))...))))..((((...))))..)))).......... ( -25.90) >DroSim_CAF1 8694 92 + 1 ------------------------UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAACUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCA ------------------------..((((((((.((((((((((.....(((.......)))......))))).)))))...))))..((((...))))..)))).......... ( -25.90) >DroEre_CAF1 7441 78 + 1 --------------------------------------NNNNNNNNNNNNCUGGCAAUAACGAACUCGAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUACCAGGCC --------------------------------------............((((......((.(((.((((..(.....)..)))).))).))...((....)).....))))... ( -13.80) >DroYak_CAF1 10199 92 + 1 ------------------------UAGCCGGAAAACUGAGGGGCUCUUCGUUGGCGCUAACGAAUUCGAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCG ------------------------..((((((((.((((((((((((((((((....)))))))...).))))).)))))...))))..((((...))))..)))).......... ( -31.40) >DroAna_CAF1 10014 113 + 1 CUGUCCAUCACCAGAACGUGGGUAUUACGGCGAAAUUGAGGAACUCGCCAUCCG---UUUCCAGUCAGAAGCCUCUGCAGCACUUCCAAUCGGAAACGGAAACAGCCUACCAGGCA ..(((..((....))..((((((.....(((((...........))))).((((---(((((.((..((((...........))))..)).)))))))))....))))))..))). ( -33.60) >consensus ________________________UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAACUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCA ..........................(((((.....(((((....))))))))))...............(((......((..((((.....))))((....))))......))). (-10.75 = -12.35 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:05 2006