Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,981,781 – 8,981,871 |
Length | 90 |
Max. P | 0.999805 |
Location | 8,981,781 – 8,981,871 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 75.59 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -10.04 |
Energy contribution | -10.60 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.33 |
Structure conservation index | 0.50 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8981781 90 + 22224390 AGCUAUUCAGAAUUUUUGAAAUUCUGA-AUAUUGAAAACUGAA--------AAGUAAAUAUAUGUUUUGGUUUAAAUGAGUGUACGAUGUUGCACUGUU ...(((((((((((.....))))))))-)))....((((..((--------(.(((....))).)))..)))).....((((((......))))))... ( -20.90) >DroSec_CAF1 10314 87 + 1 AGCGUUUCAGAAUUUUAGAAAUUCUGAAAUAUU------------GUAUGUAUAUAAAUGUAUGUAUUUGUGUGAAAUAGUGUACGAUGUUGCACUGUU ...(((((((((((.....)))))))))))...------------.....((((((((((....)))))))))).(((((((((......))))))))) ( -23.10) >DroSim_CAF1 6047 99 + 1 AGCUUUUCAGAAUUUUAGAAAUUUUGAAAUAUUGAAACCUGUAUGGUAUGUAUGUAAAUGUAUGUAUUUGUUUAAUUUGGUAUACGAUGUUGCACUGUU .((...((((((((.....))))))))(((((((..(((..((.(((((((((......)))))))))....))....)))...)))))))))...... ( -16.30) >consensus AGCUUUUCAGAAUUUUAGAAAUUCUGAAAUAUUGAAA_CUG_A__GUAUGUAUGUAAAUGUAUGUAUUUGUUUAAAUUAGUGUACGAUGUUGCACUGUU ....((((((((((.....)))))))))).................................................((((((......))))))... (-10.04 = -10.60 + 0.56)
Location | 8,981,781 – 8,981,871 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.59 |
Mean single sequence MFE | -10.83 |
Consensus MFE | -8.62 |
Energy contribution | -9.40 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.07 |
Mean z-score | -2.68 |
Structure conservation index | 0.80 |
SVM decision value | 4.12 |
SVM RNA-class probability | 0.999805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8981781 90 - 22224390 AACAGUGCAACAUCGUACACUCAUUUAAACCAAAACAUAUAUUUACUU--------UUCAGUUUUCAAUAU-UCAGAAUUUCAAAAAUUCUGAAUAGCU ....((((......))))..............................--------............(((-((((((((.....)))))))))))... ( -14.20) >DroSec_CAF1 10314 87 - 1 AACAGUGCAACAUCGUACACUAUUUCACACAAAUACAUACAUUUAUAUACAUAC------------AAUAUUUCAGAAUUUCUAAAAUUCUGAAACGCU ....((((......))))....................................------------....((((((((((.....)))))))))).... ( -12.40) >DroSim_CAF1 6047 99 - 1 AACAGUGCAACAUCGUAUACCAAAUUAAACAAAUACAUACAUUUACAUACAUACCAUACAGGUUUCAAUAUUUCAAAAUUUCUAAAAUUCUGAAAAGCU ......((............................................(((.....))).......(((((.((((.....)))).))))).)). ( -5.90) >consensus AACAGUGCAACAUCGUACACUAAUUUAAACAAAUACAUACAUUUACAUACAUAC__U_CAG_UUUCAAUAUUUCAGAAUUUCUAAAAUUCUGAAAAGCU ....((((......))))....................................................((((((((((.....)))))))))).... ( -8.62 = -9.40 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:38 2006