Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,980,534 – 8,980,626 |
Length | 92 |
Max. P | 0.966335 |
Location | 8,980,534 – 8,980,626 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 72.54 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -11.48 |
Energy contribution | -11.35 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.29 |
Mean z-score | -2.26 |
Structure conservation index | 0.53 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8980534 92 + 22224390 -------UUGAAGAAAUACUUCAACUGUUAGGGAAAUUAAAUAUUUC---AUU-UCAGUUUAGCUGGUAGAAGACAUCUAUCUAGCUAGCUUUUGGCCUAGUU -------((((((.....))))))...((((((((((.....)))))---...-((((.((((((((((((.....)))).))))))))...))))))))).. ( -23.10) >DroSec_CAF1 9069 95 + 1 -------UUGAAGAAUUCCUUCAACUGUUAAAU-AUUUAUAUGUUUAUAUAUGUUUAGUUUAGCUGGUGGAAGACAUCUAUCUAGCUAGUUUUUGGCCUAGUU -------.(((((.....)))))((((((((((-((.((((....)))).)))))))).((((((((((((.....)))).)))))))).........)))). ( -21.40) >DroSim_CAF1 4802 94 + 1 -------UUGAAGAAUUCCUUCAACUGUUAAAU-AUUUAAAUGUUUAAAUAUC-UUAGUUUAGCGGGUGAAAGACAGCUAUCUAGCUAGUUUUUGGCCUAGUU -------((((((.....))))))..(((((((-((((((....)))))))).-.....)))))((((.((((((((((....)))).)))))).)))).... ( -23.60) >DroYak_CAF1 1343 97 + 1 CAUAAAUUUGGAAAAUUUUUUAAACUUUUAGGGGACUAAAAUAUUUA---UUU-UUGGUUUAGCUGGUGGUGCAACAUUAUCUAGCUAUU-UUUG-GCUAAGU ......(((((((....))))))).((((((....))))))......---..(-((((((((((((((((((...))))).)))))))..-...)-)))))). ( -19.20) >consensus _______UUGAAGAAUUCCUUCAACUGUUAAAG_AUUUAAAUAUUUA___AUU_UUAGUUUAGCUGGUGGAAGACAUCUAUCUAGCUAGUUUUUGGCCUAGUU .......((((((.....))))))....................................(((((((((((.....)))).)))))))............... (-11.48 = -11.35 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:34 2006