Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,977,453 – 8,977,573 |
Length | 120 |
Max. P | 0.687045 |
Location | 8,977,453 – 8,977,573 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -23.71 |
Consensus MFE | -21.74 |
Energy contribution | -21.63 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.68 |
Structure conservation index | 0.92 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8977453 120 + 22224390 AGAGUAUUUAAUCCAAAGUCACUGCACAACACUUGGCCAUAAGUUAUUCCCAUUUGGAUUCCCCUUCUCAAUUGUUUCAGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU .(((...........((((((((((..((((.((((....(((....(((.....))).....))).)))).))))...((....))))))))))))))).................... ( -18.80) >DroSec_CAF1 6070 111 + 1 ---------AAUCCGAAGUCACUGCAUAACACUUGGCCACAAGUUAUCCCCAUUUGGAUUCACCUUCUCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU ---------.....(((((((((((.....(((((....))))).((((......))))............................)))))))))))...................... ( -23.80) >DroSim_CAF1 716 120 + 1 GGAGUAUUUAAUCCGAAGUCACUGCAUAACACUUGGCCAUAAGUUAUCCCCAUUUGGAUUCACCUUCCCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU (((........)))(((((((((((..((((.((((.........((((......))))........)))).))))...((....)))))))))))))...................... ( -28.53) >consensus _GAGUAUUUAAUCCGAAGUCACUGCAUAACACUUGGCCAUAAGUUAUCCCCAUUUGGAUUCACCUUCUCAAUUGUUUCUGAUUUUUCGCGGUGAUUUCUCAAAGUUUCGUCUUCUGUAUU ..............(((((((((((..((((.((((.........((((......))))........)))).))))...((....)))))))))))))...................... (-21.74 = -21.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:23 2006