Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,057,976 – 1,058,087 |
Length | 111 |
Max. P | 0.859763 |
Location | 1,057,976 – 1,058,087 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.82 |
Mean single sequence MFE | -40.70 |
Consensus MFE | -20.06 |
Energy contribution | -22.32 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.19 |
Mean z-score | -2.64 |
Structure conservation index | 0.49 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1057976 111 - 22224390 AGGACAGGAGCAGGGCCUGCUG---AUGCAGUUCCUUCUGCAAUUGCAUCUCCAGGAUCUCCCUAUCCCUUCUCUGU-UCCUG-GUAACUUCUCUGGGUGGUAGGUUGCUGUUCCU (((((((((((((((((((..(---((((((((.(....).)))))))))..))))...............))))))-)))))-(((((((..(.....)..)))))))...)))) ( -43.46) >DroPse_CAF1 12669 97 - 1 -----------------UGCUGCGCCUGAAGCUCCUUCUGCAAGUGCAGCUCCAGGAGUUCUCGUUCCCGUUCCACAUCCCUCUGCGGCUGCUCUGA-U-GAAGCCUUGGGCUCCU -----------------.(((((((.((.((......)).)).)))))))...((((((((..((..((((.............))))..))((...-.-))......)))))))) ( -28.42) >DroSec_CAF1 6992 111 - 1 AGGACAGGAGCAGGGCCUGCUG---UUGCAGUUCCUUCUGCAAUUGCAUCUCCAGGAUCUCUCUGUCCCUUCUCUGU-UCCUG-GUAACUUCUCUGGGUGGAAGGUUGCUGUUCCU (((((((((((((((..(((.(---((((((......))))))).)))......((((......))))...))))))-)))))-(((((((..(.....)..)))))))...)))) ( -44.80) >DroSim_CAF1 7935 111 - 1 AGGACAGGAGCAGGGCCUGCUG---UUGCAGUUCCUUCUGCAAUUGCAUCUCCAGGAUCUCUCUGUCCCUUCUCUGU-UCCUG-GUAACUUCUCUGGGUGGAAGGUUGCUGUUCCU (((((((((((((((..(((.(---((((((......))))))).)))......((((......))))...))))))-)))))-(((((((..(.....)..)))))))...)))) ( -44.80) >DroEre_CAF1 6961 111 - 1 CGGACAGGAUCAGGGCCUGCUG---UUGCAGUUCCUUCUGCAAUUGCAUCUCCAGGAUCUCCCUAUCCCUUCGCUGU-UCCUG-GUAACUCCGCUGGGUGGAGGGUUGCUGAUCCU .....(((((((((((((((.(---((((((......))))))).)))...((((((.(................).-)))))-)...((((((...)))))))))).)))))))) ( -43.89) >DroYak_CAF1 9431 111 - 1 CAGACAGGAUGAGGGCCUGCUG---UUGCAGUUCCUUCUGCAAUUGCAGCUCCAGAAUCUCCCUGUCCCGUCGCUGU-UCCUG-GUAACUUCUCUGGGUGGAAGGUUGCUGCUCCU ..((((((..((((..((((.(---((((((......))))))).))))..))....))..))))))..........-....(-(((((((..(.....)..))))))))...... ( -38.80) >consensus AGGACAGGAGCAGGGCCUGCUG___UUGCAGUUCCUUCUGCAAUUGCAUCUCCAGGAUCUCCCUGUCCCUUCUCUGU_UCCUG_GUAACUUCUCUGGGUGGAAGGUUGCUGUUCCU .....((((((((((..(((.....((((((......))))))..)))..))).((((......))))................(((((((..(.....)..)))))))))))))) (-20.06 = -22.32 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:04 2006