| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,976,428 – 8,976,532 |
| Length | 104 |
| Max. P | 0.906591 |
| Location | 8,976,428 – 8,976,532 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.38 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -25.87 |
| Energy contribution | -26.54 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8976428 104 - 22224390 UGUGGCGACACUUACAAUGAAACAUGGUCUGAAACUCGAGAGGCCAAAGACACUCGGACCGGACCGUCUGGGGGCACUCGAGAUCGUUCUAGGGAAACGCUA----------------CA .((((((...((((.(((((..((.....))...((((((..(((.......(((((((......)))))))))).)))))).))))).))))....)))))----------------). ( -35.21) >DroEre_CAF1 21925 97 - 1 UGUGGCGACACUUACAAUGAAACAUGGGAUGAAACUCGAGAGGCCA-AGACACUCGGA-----UUGUCUGG-GGCACUCGAAAUCGUUCUAGGGAAACGCUA----------------CA .(((((..................((((((((...(((((..(((.-(((((......-----.)))))..-))).)))))..)))))))).(....)))))----------------). ( -34.10) >DroYak_CAF1 22573 113 - 1 UGUGGCGACACUUACAAUGAAACAUGGGAUGAAACUCGAGAGGCCA-AGACACUCGGA-----CUGUCUGG-GGCACUCGAAAUCGUUCUAGGGAAACGCUACAAUGCUACAAUGCUACA ((((((..................((((((((...(((((..(((.-(((((......-----.)))))..-))).)))))..)))))))).(....)))))))..((......)).... ( -36.00) >consensus UGUGGCGACACUUACAAUGAAACAUGGGAUGAAACUCGAGAGGCCA_AGACACUCGGA_____CUGUCUGG_GGCACUCGAAAUCGUUCUAGGGAAACGCUA________________CA .(((....))).............((((((((...(((((..(((..((((..............))))...))).)))))..)))))))).(....)...................... (-25.87 = -26.54 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:22 2006