Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,972,800 – 8,972,903 |
Length | 103 |
Max. P | 0.858802 |
Location | 8,972,800 – 8,972,903 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.44 |
Mean single sequence MFE | -20.46 |
Consensus MFE | -14.03 |
Energy contribution | -13.63 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.19 |
Mean z-score | -1.69 |
Structure conservation index | 0.69 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8972800 103 - 22224390 CGCAUGCU------CAUCCUCA---UCGUCCUGUCACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGCAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU .(((.((.------........---(((((((((..(((((((................))))))))))).(((((........)))))....)))))........)).))) ( -20.12) >DroPse_CAF1 17874 85 - 1 CUUAUC---------------------CAUUUGCCAUGGCAAUCCCCCUCAUUAUCCUCAUUGCCAGGAGCGUGAAAUUUUCAAUUCUCCACAGGCC------AACGUUUGU ......---------------------.....(((.(((((((................)))))))((((..(((.....)))...))))...))).------......... ( -18.39) >DroEre_CAF1 18315 106 - 1 CGCAUCCU------CAUGCUCAGCCUCGUCCUGUUACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGGAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU .......(------((((((((((........))).(((((((................))))))).))))))))...............(((((((........))))))) ( -23.79) >DroYak_CAF1 18944 112 - 1 CUCAUCCUCAUUCGCAUGCUCAUCCUCGUCCUGUCACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGGAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU ..............(((((((......(......).(((((((................))))))).)))))))................(((((((........))))))) ( -21.59) >DroPer_CAF1 16631 85 - 1 CUUAUC---------------------CAUUUGCCAUGGCAAUCCCCCUCAUUAUCCUCAUUGCCAGGAGCGUGAAAUUUUCAAUUCUCCACAGGCC------AACGUUUGU ......---------------------.....(((.(((((((................)))))))((((..(((.....)))...))))...))).------......... ( -18.39) >consensus CUCAUCCU______CAU_CUCA___UCGUCCUGUCACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGGAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU ................................((..(((((((................)))))))...))(((((........))))).(((((((........))))))) (-14.03 = -13.63 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:19 2006