Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,965,076 – 8,965,166 |
Length | 90 |
Max. P | 0.670876 |
Location | 8,965,076 – 8,965,166 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 77.46 |
Mean single sequence MFE | -15.73 |
Consensus MFE | -13.86 |
Energy contribution | -13.53 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.15 |
Mean z-score | -0.65 |
Structure conservation index | 0.88 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8965076 90 + 22224390 GCCUUGGCGCCCACUUCGAACCCCCCUUGAUUCCCCACCC----UCCCCCGGGUAACUACAAUUGCCCUUCUACUCGGCGAACUGCCUUGAACA-- ..(..(((............................((((----......))))........(((((.........)))))...)))..)....-- ( -15.40) >DroSec_CAF1 10776 96 + 1 GCCUUGGCGCCCACUUAAAACCCCCCUUGUUUCCACCCCCCACACCCCCCGGGGAACUACAAUUGCCCGUCUACCCGGCGAACUGCCUUGAACAGC ..(..(((..................((((.....((((...........))))....))))(((((.(.....).)))))...)))..)...... ( -17.30) >DroYak_CAF1 11299 78 + 1 GCCUUGGCGCCCACUUC--------------UCCGCCCCCC--CUCCCCUUGGGAACUACAAUUGCCCUUCUACCCGGCAAACUGCCUUGAACA-- ..(..(((.........--------------........((--(.......)))........(((((.........)))))...)))..)....-- ( -14.50) >consensus GCCUUGGCGCCCACUUC_AACCCCCCUUG_UUCCACCCCCC___UCCCCCGGGGAACUACAAUUGCCCUUCUACCCGGCGAACUGCCUUGAACA__ ..(..(((............................((((..........))))........(((((.........)))))...)))..)...... (-13.86 = -13.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006