Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,958,383 – 8,958,496 |
Length | 113 |
Max. P | 0.992217 |
Location | 8,958,383 – 8,958,496 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.21 |
Mean single sequence MFE | -24.53 |
Consensus MFE | -14.74 |
Energy contribution | -16.26 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.08 |
Mean z-score | -2.37 |
Structure conservation index | 0.60 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8958383 113 - 22224390 UGAUU------AUGCAUAUGUCUGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUAGAAAAAGCAGGAUAUUAUAUACGAUCAGAUGCAGCUGAUCAAAGCAAGGCAUAUAUAC- .....------....((((((((.(((..((.......((.((((((((....)))))))).))...))..............((((((......))))))...)))))))))))....- ( -28.20) >DroSec_CAF1 4194 88 - 1 UGAUU------AUGUAUAUGUCUGUGCAAGCGAAAUGAUUGUAUGGAUCACAGGAUUUAUACAAAAAGCAGGAUAUUAUUUA-------------------------GGGCAUAUAUAC- .....------.(((((((((((............((.(((((((((((....)))))))))))....))............-------------------------))))))))))).- ( -21.95) >DroSim_CAF1 4621 88 - 1 UGAUU------AUGUAUAUGUCUGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUACAAAAAGCAGGAUAUUACUUA-------------------------AGGCAUAUAUAC- .....------.(((((((((((......((.......(((((((((((....)))))))))))...))(((......))).-------------------------))))))))))).- ( -22.50) >DroEre_CAF1 4473 118 - 1 UGAUUACAUGUAUGUAUAUGUCCGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUACAAAUAGCAGGGUAUUAUAUACAAUCUGAUGCAGCUGAUCAAGGCAAGGGAUAUAUC-- ((((((..((((((((((((.((.(((.(((......)))(((((((((....))))))))).....))).))...))))))))......))))..))))))................-- ( -29.60) >DroYak_CAF1 4012 90 - 1 UGAUU------AUGUAUAUGUCCGUGCAAGCGAAAU----GUAUGGAUCACAGGAUUUAGACAAAUAGCAGGAUAUUAUA--------------------CAAAUCAGGGGAUAUAUAUC (((((------.(((((((((((.(((........(----((.((((((....)))))).)))....)))))))).))))--------------------)))))))............. ( -20.40) >consensus UGAUU______AUGUAUAUGUCUGUGCAAGCGAAAUGGUUGUAUGGAUCACAGGAUUUAUACAAAAAGCAGGAUAUUAUAUA__________________CAA__CAAGGCAUAUAUAC_ ............(((((((((((((....)).......(((((((((((....)))))))))))...........................................))))))))))).. (-14.74 = -16.26 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:14 2006