Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,955,574 – 8,955,665 |
Length | 91 |
Max. P | 0.980003 |
Location | 8,955,574 – 8,955,665 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 90.34 |
Mean single sequence MFE | -15.12 |
Consensus MFE | -14.46 |
Energy contribution | -14.86 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.96 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8955574 91 - 22224390 CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUUGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACACGCACACACAUUAA ..............(((((((((..(......)..))))))))).((((..((((((....)))))))))).................... ( -15.40) >DroSec_CAF1 1472 85 - 1 CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACA------CUCACAUUAA ..............(((((.(((.(((.((((((..(..((.....))...)..))))))))).))).)))))..------.......... ( -16.60) >DroSim_CAF1 1494 89 - 1 CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA--CACACACAUUAA ..............(((((.(((.(((.((((((..(..((.....))...)..))))))))).))).)))))....--............ ( -16.60) >DroEre_CAF1 1601 85 - 1 CAACAACAAAUUACUGUGCUUUACUCACUUCAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA------UACACAUG ..............(((((((((((......)))..)))))))).((((..((((((....))))))))))......------........ ( -13.50) >DroYak_CAF1 1320 85 - 1 CAACAACAAAUUACUGUGCUUUAUUCACUUCAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA------GACACACA ..............((((((((...(......)...)))))))).((((..((((((....))))))))))......------........ ( -13.50) >consensus CAACAACAAAUUACUGUGCUUUAUUCACUUUAGUUGGGAGCGCAAUGCAAAUUGAUUAAAUGAUUAAUGCACACACA____C_CACAUUAA ..............(((((.(((.(((.((((((..(..((.....))...)..))))))))).))).))))).................. (-14.46 = -14.86 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:10 2006