Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,950,277 – 8,950,419 |
Length | 142 |
Max. P | 0.897523 |
Location | 8,950,277 – 8,950,379 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -23.28 |
Energy contribution | -23.23 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.41 |
Mean z-score | -2.23 |
Structure conservation index | 0.69 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8950277 102 + 22224390 UCCGGAACCAGAUGGCUCGGCUGCCUCCGGAUUGCGUAGUCCCGCUCGCUCUUCGCGAGCCCGCUGCGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUU ...(((...(((.((....(((((.....(((.(((((((...((((((.....))))))..))))))).)))....)))))....))....)))..))).. ( -39.50) >DroVir_CAF1 580 102 + 1 GCCAGAACCGCCGGGUGCAUCAGGCUCUGGAUUGCGUAUGCCCGCACGUUCCUCGCGUGCACGUUGCGCCAUCAUGCGCAGCAUAUCCUCCUUCUUCUCCUU .(((((...(((.((....)).))))))))...(.((((((..((((((.....))))))....(((((......))))))))))).).............. ( -32.10) >DroSec_CAF1 586 102 + 1 UCCGGAACCGGAUGUCUCGGCUGCCUCCGGAUUGCGUAGUCCCGCUCGCUCUUCGCGAGCCCGUUGCGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUU ...(((...((((((....(((((.....(((.((((((.(..((((((.....))))))..))))))).)))....))))))))))))))........... ( -36.60) >DroEre_CAF1 586 102 + 1 UCCUAGUCCGGAUGGUUCGGCUGCCUCCGGAUUUCGUAGUCCUGCUCGCUCUUCGCGAGCCCGCUGUGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUU ....((((((((.(((......)))))))))))..........((((((.....))))))..((((((........)))))).................... ( -34.40) >DroMoj_CAF1 580 96 + 1 ------ACCACCCGGUGCAUCUGGUUCGGGAUUGCGUAAGCCAGCACGUUCCUCGCGUGCACGUUGCGCCAUCAUACGCAGCAUGUCCUCCUUCUUCUCCUU ------.....((((.....))))...(((((.((....))..((((((.....))))))..((((((........))))))..)))))............. ( -27.80) >DroAna_CAF1 586 102 + 1 CCCCGAACCGGAUGGCUCGGCUCCCUCGGGGUUGCGCAAGCCAGCUCGUUCCUCACGUGCCCGUUGGGCCAUCAUGCGGAGCAUAUCCUCCUUCUUUUCCUU ....(((...((((((((((((((....)))..((....))..((.(((.....))).))..)))))))))))....((((......)))))))........ ( -33.30) >consensus UCCGGAACCGGAUGGCUCGGCUGCCUCCGGAUUGCGUAGGCCCGCUCGCUCCUCGCGAGCCCGUUGCGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUU .............((....(((((.....(((.((((((....((((((.....))))))...)))))).)))....)))))....)).............. (-23.28 = -23.23 + -0.05)
Location | 8,950,299 – 8,950,419 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -36.01 |
Consensus MFE | -22.10 |
Energy contribution | -23.05 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.40 |
Mean z-score | -1.81 |
Structure conservation index | 0.61 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8950299 120 + 22224390 GCCUCCGGAUUGCGUAGUCCCGCUCGCUCUUCGCGAGCCCGCUGCGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUUCUCCUUUUGGGCCAGCUUCUUUUCCAGCUGGGAGCGUGCC ((.....(((.(((((((...((((((.....))))))..))))))).)))....)).((((...((((............(((....))).(((((........))))))))).)))). ( -42.10) >DroVir_CAF1 602 120 + 1 GGCUCUGGAUUGCGUAUGCCCGCACGUUCCUCGCGUGCACGUUGCGCCAUCAUGCGCAGCAUAUCCUCCUUCUUCUCCUUCUCUUUCUGUGCCAGCUUCUUCUCCAACUGAGCACGCGCC (((.(.(((..(.((((((..((((((.....))))))....(((((......))))))))))).))))...................(((((((............))).))))).))) ( -35.60) >DroSec_CAF1 608 120 + 1 GCCUCCGGAUUGCGUAGUCCCGCUCGCUCUUCGCGAGCCCGUUGCGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUUCUCCUUUUGGGCAAGCUUCUUUUCCAGCUGGGAGCGUGCC ((.....(((.((((((.(..((((((.....))))))..))))))).)))....)).((((...(((((...........(((....)))..((((........))))))))).)))). ( -35.60) >DroWil_CAF1 614 120 + 1 ACUUCAGGAUUCCGUAGUCCAGCACGUUCUUCGCGGGCUCUUUGGGCCAUUAAACGAAGCAUAUCCUCUUUUUUCUCCUUCUCCUUUUGGGCCAAUUUUUUUUCAAGUUGGGCUCGCGCC ......((((......))))...........(((((((((.((((.(((......((((..................))))......))).))))..............))))))))).. ( -28.33) >DroMoj_CAF1 596 120 + 1 GGUUCGGGAUUGCGUAAGCCAGCACGUUCCUCGCGUGCACGUUGCGCCAUCAUACGCAGCAUGUCCUCCUUCUUCUCCUUCUCUUUCUGCGCCAACUUCUUCUCCAGCUGGGCGCGAGCU ((((((((((.((....))..((((((.....))))))..((((((........))))))..))))).....................(((((..((........))...)))))))))) ( -38.30) >DroAna_CAF1 608 120 + 1 CCCUCGGGGUUGCGCAAGCCAGCUCGUUCCUCACGUGCCCGUUGGGCCAUCAUGCGGAGCAUAUCCUCCUUCUUUUCCUUCUCCUUCUGAGCCAGUUUCUUCUCCAGCUGGGCGCGCGCU ......(((((((....).))))))........(((((((((((((.......((((((......))))...........(((.....)))...))......)))))).))))))).... ( -36.12) >consensus GCCUCCGGAUUGCGUAGGCCAGCACGUUCCUCGCGUGCCCGUUGCGCCAUCAUACGCAGCAUAUCCUCCUUCUUCUCCUUCUCCUUCUGGGCCAGCUUCUUCUCCAGCUGGGCGCGCGCC ......((((...........((((((.....))))))..((((((........))))))..))))......................(((((((((........))))).))))..... (-22.10 = -23.05 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:05 2006