Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,947,354 – 8,947,470 |
Length | 116 |
Max. P | 0.589374 |
Location | 8,947,354 – 8,947,470 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -42.69 |
Consensus MFE | -29.52 |
Energy contribution | -28.30 |
Covariance contribution | -1.22 |
Combinations/Pair | 1.35 |
Mean z-score | -1.18 |
Structure conservation index | 0.69 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8947354 116 - 22224390 UAUAUGCAUAUUC---CAGGUGAACCCGAGCUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCGGCGCUGGAGGCCAUGAACGAGCUGGAUCUGUUCGGAGCCCGUGGCGGUCCGGCUAG ............(---((((....)).((((((.....))))))...)))(((((((..(((...)))...)))))))....(((((((.((((((((...))).)))))))))))).. ( -45.40) >DroPse_CAF1 44989 113 - 1 ---UUCGAUCUUU---CAGGUGAGCCGGAAUUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCCGCCUUGGAGGCCAUGAACGAGUUGGAUUUGUUUGGAGCACGCGGCGGACCAGCCAG ---..........---...(((..(((((...((((.(((((((...((((....((((((...))))))..)))).....))))))))))).)))))..)))..(((......))).. ( -41.90) >DroGri_CAF1 12358 108 - 1 ---------UUCA--UUAGGUGAACCCGAGUUGAAUGCCAGCUCCAUUGGCAUGGCUAAGGCCGCACUUGAGGCCAUGAAUGAGCUGGAUUUGUUUGGCGCACGCGGUGGACCCGCUAG ---------....--...(((..(((((.((..(((.(((((((......((((((((((......)))..)))))))...)))))))....)))..))...)).)))..)))...... ( -38.90) >DroWil_CAF1 13577 118 - 1 AA-UUUUAUCUUUGGAUAGGUGAGCCUGAGCUGAAUGCCAGCUCCAUUGGCAUGGCAAAGGCAGCUUUGGAGGCAAUGAAUGAAUUGGAUUUAUUUGGAGCCCGUGGCGGUCCGGCCAG ..-..((((((......))))))(((.((((((.....))))))....))).((((...(((.(((...(.(((..(((((((((...)))))))))..))))..))).)))..)))). ( -38.70) >DroMoj_CAF1 11702 107 - 1 ---------GUGA---CAGGUGAGCCCGAACUGAAUGCCAGCUCCAUCGGCAUGGCUAAGGCAGCAUUAGAGGCCAUGAACGAGCUGGAUUUGUUUGGAGCACGCGGUGGACCCGCAAG ---------....---.......((((((((.((((.(((((((......(((((((..............)))))))...))))))))))))))))).))..((((.....))))... ( -40.24) >DroAna_CAF1 10437 115 - 1 AAACUGCCU-UUC---UAGGUGAACCCGAGCUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCCGCUCUCGAGGCCAUGAACGAGCUGGAUCUGUUCGGGGCCCGCGGUGGUCCCGCCAG .....((((-...---.))))...(((((((.((...(((((((..(((((...)))))((((........))))......))))))).)).)))))))......((((....)))).. ( -51.00) >consensus ____U__AUCUUA___CAGGUGAACCCGAGCUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCCGCACUGGAGGCCAUGAACGAGCUGGAUUUGUUUGGAGCACGCGGCGGACCCGCCAG ...................(((..(((((((.((...(((((((......(((((((.((......))...)))))))...))))))).)).)))))).)..)))(((......))).. (-29.52 = -28.30 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:02 2006