Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,946,605 – 8,946,700 |
Length | 95 |
Max. P | 0.561578 |
Location | 8,946,605 – 8,946,700 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 70.93 |
Mean single sequence MFE | -17.33 |
Consensus MFE | -12.06 |
Energy contribution | -11.23 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.53 |
Mean z-score | -0.81 |
Structure conservation index | 0.70 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8946605 95 - 22224390 -------UGCAAUUUCUUCCUUAUCUUUUUGCAUUGAUUUUAAUUGAACUUUUUAUUAUAUGCUUAGGGUUUCCUGGCUGUGGGCGAAUUGGAUCCAUUGAA -------(((((................))))).....((((((.((.((..((.(((((.(((.(((....)))))))))))...))..)).)).)))))) ( -13.99) >DroSec_CAF1 10725 100 - 1 UUUUAUAUGCAAUUUCUUCCUUAUCUUU--GAUUGGAUUUUAAUUGAACUUUUUAUUAUUUGCUUAGGGUUUUCUGGCUGUGGGCGAAUUGGAUCCAUUGAA .........((((....(((.....((.--.((((.....))))..)).........(((((((((.((((....)))).))))))))).)))...)))).. ( -17.80) >DroSim_CAF1 10378 83 - 1 -----------------UACUUAUCUUU--GAUUGUAUUUUAAUUAAACUUUUUAUUAUUUGCUUAGGGUUUCCUGGCUGUGGGCGAAUUGGAUCCAUUGAA -----------------.....((((((--(((((.....)))))))..........(((((((((.((((....)))).))))))))).))))........ ( -15.00) >DroEre_CAF1 10827 100 - 1 UUUUAUAUGAAAUUUCUUCCGUAUCUUA--AGAUUGGUUUUAAUCGAACUUUUUACUAUUUGACCAGGGCUUCCUGGCUGUGGGCGAGUUGGAUCCAUUGAA .................((((((....(--((.(((((....))))).)))..))).(((((.(((.((((....)))).))).))))).)))......... ( -20.00) >DroWil_CAF1 12901 81 - 1 ------------------GGGCAUCUUU--U-UUACAUUUUCACGUUUUUUUUUUUAAUUUAUCUAGGGCUUCUUGGCCGUUGGUGAAUUGGAUCCCCUGAA ------------------(((.(((...--.-..((........)).........(((((((((.(.((((....)))).).)))))))))))).))).... ( -18.20) >DroYak_CAF1 10200 99 - 1 UUUUAUAUGAAGUUUCUUCCUUAUCUAA--AGAUUGGU-UUAAUCGAACUUUUCAUUAUUUGAUUAGGGUUUUCUGGCCGUGGGCGAGUUGGAUCCCUUGAA ........((((...)))).(((..(((--.((..(((-((....)))))..)).)))..)))((((((...((..((((....)).))..))..)))))). ( -19.00) >consensus _______UG_AAUUUCUUCCUUAUCUUU__GAAUUGAUUUUAAUUGAACUUUUUAUUAUUUGCUUAGGGUUUCCUGGCUGUGGGCGAAUUGGAUCCAUUGAA ....................................................((...(((((((((.((((....)))).)))))))))..))......... (-12.06 = -11.23 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:01 2006