Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,935,357 – 8,935,463 |
Length | 106 |
Max. P | 0.780917 |
Location | 8,935,357 – 8,935,463 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.17 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -19.62 |
Energy contribution | -19.12 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.74 |
Structure conservation index | 0.82 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8935357 106 + 22224390 CAGCCGCCUGCCAUUGUCAAGAUAGCAUUCUUGAUCUGUCGAUGAGAAUAUCAUAAUGGUGUUUUGCAAUGUCAUCUUGGCAUC---AUAUCACUUUUUCAU----UAUGCUA ..((((..((.(((((.(((((((.((((..((((...((.....))..)))).)))).)))))))))))).))...))))...---...............----....... ( -25.40) >DroSec_CAF1 5632 106 + 1 CAGCCGCCUCCCAUUGUCAAGAUAGCAUUCUUGAUCUGUCGAUGAAAAUAUCAUAAUGGUAUUUUGCAAUGUCAUCUUGGCAUC---AUAUCACAUUUUUAU----CAUGCCA ...........(((((.(((((((.((((..((((...((...))....)))).)))).))))))))))))......((((((.---(((.........)))----.)))))) ( -22.70) >DroSim_CAF1 5865 106 + 1 CAGCCGCCUGCCAUUGUCAAGAUAGCAUUCUUGAUCUGUCGAUGAAAAUAUCAUAAUGGUGUUUUGCAAUGUCAUCUUGGCAUC---AUAUCACUGUUUUAU----CAUGCCA ........((.(((((.(((((((.((((..((((...((...))....)))).)))).)))))))))))).))...((((((.---(((.........)))----.)))))) ( -23.70) >DroEre_CAF1 4659 108 + 1 UCGCCGUCUGCCAUUGUCAAGAUAGCGUUCUUGAUCUGCCAAGGAAAAUAUCAUGAUGGUGAUUUGAAAUGUCAUCUUGGCAUCACCAUAUCCUCUU-----UUUAAAUACAA ........(((((..((((.((((...((((((......))))))...)))).))))((((((.......)))))).)))))...............-----........... ( -24.50) >consensus CAGCCGCCUGCCAUUGUCAAGAUAGCAUUCUUGAUCUGUCGAUGAAAAUAUCAUAAUGGUGUUUUGCAAUGUCAUCUUGGCAUC___AUAUCACUUUUUUAU____CAUGCCA ..............(((((((((..((((.(((......)))..((((((((.....))))))))..))))..)))))))))............................... (-19.62 = -19.12 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:58 2006