Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,931,210 – 8,931,312 |
Length | 102 |
Max. P | 0.663941 |
Location | 8,931,210 – 8,931,312 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.16 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -22.99 |
Energy contribution | -23.00 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.13 |
Mean z-score | -2.27 |
Structure conservation index | 0.81 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8931210 102 + 22224390 GAAUAUAAAAAAUAAAUCAAAGCCAAAGCGCAAGCCCACUCCCAUGGAAGUAGAGGAGGCUGAGCUAGACGAGGUGCGCUCGGAUGAGCCGCAGCCAGGGGA ......................((...((....))((..(((..((....))..)))(((((.(((...((((.....))))....)))..))))).)))). ( -27.20) >DroSec_CAF1 2936 102 + 1 GAAAAUAAAAAAUAAAUCAAAGCCAAAGAGCAAGCCCAUUUCUAUGGAAGUGGAGGAGACUGAGCUAGAGGAGGCGCGCUCGGAUGAGUCGCAGUCAGAGGA ................((...(((....(((....(((((((....)))))))((....))..)))......)))((((((....))).))).....))... ( -26.80) >DroSim_CAF1 2938 102 + 1 GAAAAUAAAAAAUAAAUCAAAGCCAAAGAGCAAGCCCAUUUCUAUGGAAGUGGAGGAGACUGAGCUAGAGGAGGCGCGCUCGGAUGAGCCGCAGCCAGAGGA ......................((....(((....(((((((....)))))))((....))..)))...((..(((.((((....)))))))..))...)). ( -30.70) >consensus GAAAAUAAAAAAUAAAUCAAAGCCAAAGAGCAAGCCCAUUUCUAUGGAAGUGGAGGAGACUGAGCUAGAGGAGGCGCGCUCGGAUGAGCCGCAGCCAGAGGA ......................((........((((((((((....)))))))((....))..)))......(((((((((....))).))).)))...)). (-22.99 = -23.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006