Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,927,732 – 8,927,829 |
Length | 97 |
Max. P | 0.825125 |
Location | 8,927,732 – 8,927,829 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 67.46 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -6.16 |
Energy contribution | -7.18 |
Covariance contribution | 1.02 |
Combinations/Pair | 1.31 |
Mean z-score | -2.17 |
Structure conservation index | 0.25 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8927732 97 - 22224390 UCGAUCUUAAUAACUGCCUG--UUAGGAAA-----AAAUCUCAAAUUCUGGCUAUAAAGGCGCUAGGUGGGCAGCACAAUUGGCGUCUUUUGAUUUCCACACAA ....((((((((......))--))))))..-----.............(((....((((((((((.(((.....)))...))))))))))......)))..... ( -22.00) >DroSec_CAF1 41662 82 - 1 AGGAUCUUAAUAACUGCCUGUGUUAAGAAA-----AAAUCUCAAAUUCUGGCUAAAAA-----UUGGUGGGCAAUACCA------------AAUUUAGACGGAA ....((((((((.(.....)))))))))..-----..........(((((.(((((..-----((((((.....)))))------------).))))).))))) ( -17.70) >DroSim_CAF1 38391 80 - 1 AGGAUCUUAAU---UGCCUGUGUUAAGAAAA----AAAUCUCAAAUUCUGGCUAAAAA-----UUGGUGGGCAAUACCA------------AAUUUUGACGGAA ....(((((((---.......)))))))...----..........(((((..(((((.-----((((((.....)))))------------).))))).))))) ( -16.50) >DroEre_CAF1 41902 102 - 1 AGGAACUUGAUAGUUGCCUGUGUUAAAAAU--AAAAGAGCUAAAAUCCUGGCUACAAAGACGCCGGGUGGGCAGCACAAUUGGCGUCUUUUGAUUUCCAUGAUA .((((.(..(.((.((((((((((......--......(((.....((((((.........))))))..)))))))))...)))).)).)..).))))...... ( -28.90) >DroYak_CAF1 42669 104 - 1 AGGAACUUAAUAACUGCCUGGGUUAAAAAAAAAAAAGGGCUAGAAUUCUGGCCGCAAAGGCGCCAGUUGGACAGCACAAUUGGCGUCUCUUGAAUUCCGCGGAA .............((((..(((((.............((((((....)))))).(((((((((((((((.......)))))))))))).)))))))).)))).. ( -36.90) >consensus AGGAUCUUAAUAACUGCCUGUGUUAAGAAA_____AAAUCUCAAAUUCUGGCUAAAAAG_CGCUAGGUGGGCAGCACAAUUGGCGUCU_UUGAUUUCCACGGAA ...............(((...............................)))......(((((((.(((.....)))...)))))))................. ( -6.16 = -7.18 + 1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:53 2006