Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,926,952 – 8,927,071 |
Length | 119 |
Max. P | 0.626831 |
Location | 8,926,952 – 8,927,071 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -40.45 |
Consensus MFE | -28.16 |
Energy contribution | -28.47 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.43 |
Mean z-score | -1.19 |
Structure conservation index | 0.70 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8926952 119 + 22224390 ACGCCGACCUUGUGCCCGCCAAGCUGGCCAACACUCGAUGCCCCCAGGUGGUCAUACAGUUCUAUGAGGAGCGCCUCACCUGGCACACGGGCAGCGGCAAUGGUAAUGGGAAUACGAAU- ...((.(((...((((((((.....)))..........(((((((((((((.......(((((....)))))...)))))))).....)))))).))))..)))...))..........- ( -40.10) >DroGri_CAF1 46243 119 + 1 AUGCCGAUCUAGUGCCAGCCAAGCUGGCCAACAUCAAGUGCCCCAAAGUCGUUAUACAAUUCUACGAAGAGCGUCUCACAUGGUACACUGGUAACGGCAAUGGCAAUGGUAAUGGUAAU- .(((((..(((((((((((...)))))).........(((((....((.((((...(........)...)))).)).....))))))))))...)))))....................- ( -32.80) >DroEre_CAF1 41182 113 + 1 AUGCAGACCUGGUGCCCGCCAAGCUGGCCAACAUUCGGUGUCCCCAGGUGGUCAUCCAGUUCUAUGAGGAGCGCCUCACCUGGCACACGGGCAGCGG------CAAUGGGAAUAGCAAU- .(.((...(((.((((((((.....))).........((((..((((((((.......(((((....)))))...)))))))).))))))))).)))------...)).).........- ( -40.00) >DroWil_CAF1 54774 120 + 1 AUGCCGAUUUAGUGCCUGCCAAACUGGCUAAUAUUAAAUGCCCUCAGCUUGUCAUUCAGUUCUAUGAAGAGCGUCUCACCUGGCACACUGGCAAUGGCAACGGCAAUGGUAAUUCAAGUG .(((((......((((.(((.....)))..........((((....((((.((((........)))).))))(((......))).....))))..)))).)))))............... ( -33.00) >DroYak_CAF1 41947 119 + 1 ACGCUGACCUGGUGCCCGCCAAGCUGGCCAACAUACGCUGUCCCCAGGUGGUCAUACAGUUCUAUGAGGAGCGUCUCACCUGGCACACGGGCAGCGGCAACGGCAAUGGGAAUAGCAAU- ..((((.(((..((((.(((.....))).......((((((((((((((((....((.(((((....))))))).)))))))).....)))))))).....))))..)))..))))...- ( -48.50) >DroAna_CAF1 35040 112 + 1 ACGCUGAUCUGGUGCCGGCCAAGCUGGCCAACAUCCGCUGUCCCCAGGUGGUGAUCCAAUUCUACGAGGAGCGCCUUACUUGGCACACCGGCAGCGGGAACGGCAACGGAAA-------- .......((((.((((((((.....))))....(((((((((.((((((((((.(((..........))).))))..))))))......)))))))))...)))).))))..-------- ( -48.30) >consensus ACGCCGACCUGGUGCCCGCCAAGCUGGCCAACAUUCGAUGCCCCCAGGUGGUCAUACAGUUCUAUGAGGAGCGCCUCACCUGGCACACGGGCAGCGGCAACGGCAAUGGGAAUAGCAAU_ ..((((..(((.((((((((.....)))...............((((((((.......(((((....)))))...)))))))).....))))).)))...))))................ (-28.16 = -28.47 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:52 2006