Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,051,733 – 1,051,827 |
Length | 94 |
Max. P | 0.563291 |
Location | 1,051,733 – 1,051,827 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 78.31 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -21.51 |
Energy contribution | -21.73 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.25 |
Mean z-score | -1.31 |
Structure conservation index | 0.64 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1051733 94 - 22224390 CUCCUGAUAUCCCC--CGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCGCUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCU (((((((((.((((--((.((....(((((...(((........)))...)))))......))))))(((((....))))))).)).))))))).. ( -30.60) >DroVir_CAF1 1587 85 - 1 UUCCUGGUAACCGG--CGACAUC------ACCGCCCGCCCCGCUGGGC--UCA-UGAUGCGGCUGUGGCAAAUCGAUUUGCGGCUGCUCCGCAUGC ............((--((.....------..)))).((((....))))--...-..((((((..((.(((((....))))).))....)))))).. ( -28.60) >DroSec_CAF1 712 94 - 1 CUCCUGAUAUCCUC--CGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCACUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCA (((((((.......--.((((((...))..))))..(((((.(..(((............)))..).(((((....))))))).)))))))))).. ( -30.50) >DroSim_CAF1 1670 96 - 1 CUCCUGACAUCCCAGGGGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCACUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCA (((((((((.(((((((((((((...))..)))))........((((....))))......))))))(((((....)))))...)).))))))).. ( -37.50) >DroEre_CAF1 715 94 - 1 CUCCUGAUACUCCC--CGUGGCCACUGGCCACACCUGCACCACUAGGACCUUCCGCUUCAUCCUGGGGCAGAUCGAUCUGCGGCUGCUCGGGGACA ..........((((--(((((((...))))))....(((((.((((((............)))))).(((((....))))))).)))..))))).. ( -38.70) >DroYak_CAF1 2796 94 - 1 CUCCUGAUAUCCCC--CGUGGCCACUGGAUCCUCCGGCACCACUAGGACUUUCCGCUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGGGCG ..........((((--((.((((.((((.....)))).....((((((............)))))).(((((....)))))))))...)))))).. ( -35.90) >consensus CUCCUGAUAUCCCC__CGUGGCCACUGGAACCACCUGCACCACUGGGACUUUCCGCUUCAUCCUGGGGCAGAUCAAUCUGCGGCUGCUCGGGAGCA (((((((..........((((((...................((((((............)))))).(((((....)))))))))))))))))).. (-21.51 = -21.73 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:57 2006