Locus 3329

Sequence ID X_DroMel_CAF1
Location 8,884,867 – 8,884,972
Length 105
Max. P 0.953059
window5453

overview

Window 3

Location 8,884,867 – 8,884,972
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -24.61
Consensus MFE -15.35
Energy contribution -15.27
Covariance contribution -0.08
Combinations/Pair 1.20
Mean z-score -2.47
Structure conservation index 0.62
SVM decision value 1.43
SVM RNA-class probability 0.953059
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8884867 105 + 22224390
UAGUUUCUAAUUGUUUUUGAGAUAUAAGUAGAAAUGUG---------------UCAUAAAUCAGUGGCAUAACAAAUGUGAAUACUGUUCUAAAGAGAAAACGAUGAGAAGUGGAAACUU
.(((((((((((((((((.(((....((((....((((---------------((((......))))))))((....))...))))..))).....)))))))))......)))))))). ( -22.90)
>DroSec_CAF1 15347 105 + 1
CGGAUUCUAAUUGUUUUUGAGAUAUAAGUAGAAAUGUG---------------UCAUAAAUAAGUGUCAUAACAAACGUAAAUACUGUACCAUAGAGAAAACGAUUAGAACUGCAAACUU
(((.((((((((((((((........((((....((((---------------.(((......))).))))((....))...))))..........)))))))))))))))))....... ( -21.17)
>DroSim_CAF1 15514 105 + 1
CGGUUUCUAAUUGUUUUUGAGAUAUAAGUAGAAAUGUG---------------UCAUAAAUAAGUGCCAUAACAAACGUGAAUACUGUUCCAUAGAGAAAACGAUUAGAACUGCAAACUU
(((((.((((((((((((..((((((........))))---------------)).......((((.(((.......)))..))))..........)))))))))))))))))....... ( -20.20)
>DroEre_CAF1 13963 118 + 1
CAGUUUCUAAUUGUUUUUGAGAAAUAAGUAGAUGUGUGAAGGUAUUUUUAUGAUCUUAAAUAAGUA-CAUAACAGACGUGAAGACUGUUACAUAG-GAAAACGAUUAGAACUGAAAACUU
(((((.((((((((((((.(....).......(((((((.(((...((((((.(((..........-......))))))))).))).))))))).-)))))))))))))))))....... ( -26.59)
>DroYak_CAF1 14369 119 + 1
CAGUUUCUAAUUGUUUUUGGUAAAUAAGUAGUCAUGUGAAGGUAUUUUUAUGGUCAUAAAUAAGUA-CAUAACAAACGUGAAUACUGUUGCAUAGAGAAAACGAUUAGGAAUGCAAACUU
..((((((((((((((((.((((...((((.((((((....((((((((((....))))..)))))-).......)))))).)))).)))).....))))))))))))))))........ ( -32.20)
>consensus
CAGUUUCUAAUUGUUUUUGAGAUAUAAGUAGAAAUGUG_______________UCAUAAAUAAGUG_CAUAACAAACGUGAAUACUGUUCCAUAGAGAAAACGAUUAGAACUGCAAACUU
(((.((((((((((((((........((((...((((......................................))))...))))..........)))))))))))))))))....... (-15.35 = -15.27 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:39 2006